Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02062 ATGGAGAACAACACCGTATTCAATGATCGGAACTTTGTGGACAATGAACATGAAGAAGTTCCTGATTTCTTTTGTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGTGAGTCTCAATGTCCAATATGTAGGCATCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGATCTATCCCGTTGCTTACAAGAGAAGGATAGATCAAACTCTTGAGGAAGAAAAGAAATCGGGCTTGTACTCCCCTCAACTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTAGCCCTTCTTCCTCCCCTATTAAAGGGCTGCTGTCTAACTCATGCAATGTGGGAACATCTGAATGTATGGAGCAATCAGGGTGCAGTGCTCATGAAGGAGATGAAAGCATCATCTATTTTGAACACTCTTTTGATGGAGAACATGAAGTTATTGGGACTCCTGTTGAAGGAAAAAATATGCCTCAGGAGGAGCTTTATCTACAACCGAAAATATCAGTTGCAGAAGATATCCCATACCTCAATAGAGAGGAAGAAAAGAAATCGGGCTTCTACTCCCCTCAACTTGATCCTGATAATTGTGAATCACAAGCCAAATTTGGTCATTCTGGTATTCCTTCTTCCTCCCCTATTAAAAAGATATCTGAATGTATGGAGCAATCATGGTCCAGTGCTCATGAAGGAGATGAAAGCATCATCTATCCTGAACACTCTTCTGATGGAGAACCTGAAGTTGTTGGGACTCCTGTTGAAGGAAAAAAAAAGCCTCAGGAGGAGCTTTATCTACAACAGAAAATGTCAGCTGCAGATGTGTTGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTATACTGTGAAACTTGTGTCTTCAAGTTGGCTGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTGGAAGAACAATTTCCTGAAGAATATGCACGGCGAAGAGATGCTCTTGAACTAAAGCAAATCAAAGTCAAACCTGAGACACCTTCTTGTTGTATGTATATCTGGCTACATATTATTTTATACATGTTTGATATCTTGAAGCATACATTTTTGACTAAAATCATTGGAATATATGTTCATATATTTTAG 1272 0.3907 MENNTVFNDRNFVDNEHEEVPDFFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQMLHFLLLKIYPVAYKRRIDQTLEEEKKSGLYSPQLDPDTCESQAKFGHSGSPSSSPIKGLLSNSCNVGTSECMEQSGCSAHEGDESIIYFEHSFDGEHEVIGTPVEGKNMPQEELYLQPKISVAEDIPYLNREEEKKSGFYSPQLDPDNCESQAKFGHSGIPSSSPIKKISECMEQSWSSAHEGDESIIYPEHSSDGEPEVVGTPVEGKKKPQEELYLQQKMSAADVLCTMCKQLLFHPVVLNCGHVYCETCVFKLADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPEEYARRRDALELKQIKVKPETPSCCMYIWLHIILYMFDILKHTFLTKIIGIYVHIF. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02062 423 ProSiteProfiles Zinc finger RING-type profile. 306 344 IPR001841 -
Seca2g02062 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 388 IPR013083 -
Seca2g02062 423 SMART ring_2 306 343 IPR001841 -
Seca2g02062 423 SMART ring_2 26 65 IPR001841 -
Seca2g02062 423 SUPERFAMILY RING/U-box 301 347 - -
Seca2g02062 423 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Seca2g02062 423 FunFam E3 ubiquitin-protein ligase PRT1 293 388 - -
Seca2g02062 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 152 IPR013083 -
Seca2g02062 423 PANTHER UNCHARACTERIZED 17 389 - -
Seca2g02062 423 ProSitePatterns Zinc finger RING-type signature. 321 330 IPR017907 -
Seca2g02062 423 FunFam E3 ubiquitin-protein ligase PRT1 17 112 - -
Seca2g02062 423 Pfam RING-type zinc-finger 306 330 IPR027370 -
Seca2g02062 423 SUPERFAMILY RING/U-box 13 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02062 Seca-Chr2 46193035 46198967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02062 11 66 C3H Transcription Factor Family AT1G74990 38.596 2.13e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02062 - - gmx:100787174 321.242