Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02055 ATGAAGCCCACTTTGGCTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTACATTCATGATTATTTTATGAAAAGAAAATTACATACTGCTGCAAAAGCTTTTATGACAGAAGGAAAAGTTTCCACCGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATTCATCTCAAGGACAAATGAGAAGCATTCTGAGGCTGCTTCAGCTTACATTGAGACCCAGCAAGCGAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGGAATGCACAGTTACAGCGCAGAGATCCTAATCATCCTGCACTTGGTGGTTCTTTAAATGCCTTGAACTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCAAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCACGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAAATTCAGGCCAGGACTCCTTTGGCCACTGACATGAAAGGAGAAGTTAACTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTCTATCGACAAGCAATTTTACAATCAAAGTCTGGGCTCGGCAGTGCAGGATTAAATCAAGGAGTTACTAGTCTTCCATTGAAGGGCTGGCCTCTAACTGGAATTGATCAACTGAGACCTAATTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATTTCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAGAACAACCTTGGGAATTCTAACTATGGTGATATGGATCCACGAAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTACCAGGAATGATGGATTTATTTGCTCCCAAATGCAGTCAGGTTCACCTAAGATGAAGATGGCCCAGTCGCAACATTCATTATCTCAACAGCAGGAGCAATTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTTCTTCTGGAGCTGCTAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCACCATCAACGCACACACCCGGTGATGGATTAAATACAGCAAGTAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGTCTTGCATCATCTTCAAATTTGCTGGATGACATGGAACGATTTGGAGATGTTGGTGCTTTAGAAGATAATGTGGAATCCTTCCTATCAAATGATGGAGGAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTTACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCACAGTCACTTGCTGTCACTTTTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGGGATGACATGAAGGTTGTCCTCTGGAACATGGACACTTTAAAGACAGAGAGCACTCCTGAAGAACACAAATCAGTTATTTCAGATGTCCGTTTTAGACCAAATTCGACTCAGTTGGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATGTAACAGACTTCTCTCAGTTTGCCTATAAATTATTGATAACTTGTACATCTGATGTTTAA 1785 0.4275 MKPTLAQAQSNWEADKMLDVYIHDYFMKRKLHTAAKAFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAASAYIETQQAKAREQLQMQQLQLMQQRNAQLQRRDPNHPALGGSLNALNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQIQARTPLATDMKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPNLGVQVQKPNLTTQNQFLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSTRNDGFICSQMQSGSPKMKMAQSQHSLSQQQEQLQQNNRKRKQHSSSGAANSTGTGNTAGPSPNSPPSTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLDDMERFGDVGALEDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFGCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLKTESTPEEHKSVISDVRFRPNSTQLATASFDKSVRLWDAANVTDFSQFAYKLLITCTSDV. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02055 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Seca2g02055 594 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Seca2g02055 594 SMART WD40_4 491 530 IPR001680 GO:0005515
Seca2g02055 594 SMART WD40_4 533 572 IPR001680 GO:0005515
Seca2g02055 594 MobiDBLite consensus disorder prediction 462 485 - -
Seca2g02055 594 Coils Coil 351 371 - -
Seca2g02055 594 Pfam WD domain, G-beta repeat 539 572 IPR001680 GO:0005515
Seca2g02055 594 Pfam WD domain, G-beta repeat 503 530 IPR001680 GO:0005515
Seca2g02055 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 572 - -
Seca2g02055 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Seca2g02055 594 MobiDBLite consensus disorder prediction 304 411 - -
Seca2g02055 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Seca2g02055 594 SUPERFAMILY WD40 repeat-like 497 576 IPR036322 GO:0005515
Seca2g02055 594 MobiDBLite consensus disorder prediction 324 411 - -
Seca2g02055 594 Gene3D - 472 583 IPR015943 GO:0005515
Seca2g02055 594 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 578 IPR044716 GO:0003714
Seca2g02055 594 Coils Coil 94 114 - -
Seca2g02055 594 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Seca2g02055 594 Pfam LisH 16 42 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02055 Seca-Chr2 45790864 45797270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02055 496 572 Miscellaneous Gene Families AT5G08390 33.750 2.96e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca2g02055 WD40 6.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02055 - - gmx:100799686 907.131