Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02050 ATGATGCAGAGAAGATTAACCATGGATTCTGATGGCAACGTTCGAGTGTACAGTAGAAATGATGTGTCAAAGAAATGGTATGTTTCATGGCAATTCATATCTGACTCTTGCACCATTCACGGAATTTGTGGGGCTAACAGCATTTGCAGTTACCATCCTGAAAACGGAACGAAATGCTCGTGTTTACCGGGGTACAGAGTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCTTATTTGATCATAATTGCTATAGAAGTGGGTCTACCTTTTTGGAGATGCGCGGGGTTGAGCTCTATGGTTATGACAAACATTATTGCCACAACTATACTTACAAAAATTGTGAGAATTTATGTTTACAAGATTGTAACTGCATAGGGTTCGAGTACAAATATGACAAGGACAAAAACACTAACAACTTTGTGTTTAACTGCTACACAAAAATACAGTTGCTGAATGGGAGGCGTTCAACAAGTTTTGAAGGCACAGTTTACCTGAGACTGCCTAAAGTTAAAAACTTCTCTGAGCAAAAATCTGAGAGTGCACATCATCATGATTGTTTTGTGCAGCTTGACAAAGACTATGTCAAAAAACAAGCTTCTCGTTTTGTGAGATTTTTTCTCTGGCTTGCCACAGCTGTTGGAGCTTTAGAAGTGGTTTGCATTTTGGTAGTTTGGGGTTTCTTAGTTAGGACCCGCCAAAATTCTGAAGCAGATAAAGAGGGCTATCTTCTTGCAGTAGTTGGATTCAGAAGATTTAGTTACTCTGAGCTGAAGAAAGCCACAAAGGGGTTCAGTCAAGAGATTGGAAGGGGTGCAGGAGGGGTTGTATACAAAGGTGTATTATCAGACCAAAGACATGCAGCAATAAAAAGGCTCAATGAAGCTAATCAAGGAGAAAGGGACTTCCTTGCTGAAGTAAGCATCATTGGAAGGCTGAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAACACAGGCTTTTGGTATATGAGTTCATGGAAAATGGTTCTTTGGCAGAAAATCTCTCCTCCAACACACTTGATTGGAGTAAGAGGTATAATATTGCTCTTGGAACGGCTAGAGTTTTGGCTTATCTTCATGAAGAATGCTTGGAATGGATTTTGCACTGTGATATAAAACCTCAAAACATACTTCTGGATTCAAACTATCAGCCCAAGGTAGCAGATTTTGGCTTGTCTAAGCTAAGAAACAGAAATAACCTCAACAATTCAAGCTTCTCAATGATCAGAGGCACTAGAGGATATATGGCACCTGAGTGGGTTTTCAATTTAGCATTAACCTCCAAAGTGGATGTTTACAGCTATGGAATTGTTCTCTTGGAGATGATAACCGGAAAGGGTCCAACAATGAATACTGAGACACTCGATGGAGCAGAAGCAGCATATGATGGAAGGCTGGTAACATGGGTCAGAGAGAAAAAGAGGAGCACATCTTGGGCGGAGCAAATCATGGATCCTGCAATGGGGCCAAATTATGATAAAAATAAGATGGAAATTTTGGCTACAGTTGCCTTGAACTGTGTGGAGGAAGACAAAGATACAAGGCCTACTATGAGCCAAGTGGTTGAGATGCTCCAAAGCCATGAAAGCAATGTTTAG 1638 0.4066 MMQRRLTMDSDGNVRVYSRNDVSKKWYVSWQFISDSCTIHGICGANSICSYHPENGTKCSCLPGYRVKNHSDWSYGCEPLFDHNCYRSGSTFLEMRGVELYGYDKHYCHNYTYKNCENLCLQDCNCIGFEYKYDKDKNTNNFVFNCYTKIQLLNGRRSTSFEGTVYLRLPKVKNFSEQKSESAHHHDCFVQLDKDYVKKQASRFVRFFLWLATAVGALEVVCILVVWGFLVRTRQNSEADKEGYLLAVVGFRRFSYSELKKATKGFSQEIGRGAGGVVYKGVLSDQRHAAIKRLNEANQGERDFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEFMENGSLAENLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNYQPKVADFGLSKLRNRNNLNNSSFSMIRGTRGYMAPEWVFNLALTSKVDVYSYGIVLLEMITGKGPTMNTETLDGAEAAYDGRLVTWVREKKRSTSWAEQIMDPAMGPNYDKNKMEILATVALNCVEEDKDTRPTMSQVVEMLQSHESNV. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02050 545 CDD STKc_IRAK 270 539 - -
Seca2g02050 545 SUPERFAMILY Protein kinase-like (PK-like) 244 538 IPR011009 -
Seca2g02050 545 Gene3D Phosphorylase Kinase; domain 1 230 338 - -
Seca2g02050 545 Pfam Protein kinase domain 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02050 545 FunFam S-receptor-like serine/threonine-protein kinase 233 338 - -
Seca2g02050 545 SMART serkin_6 264 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02050 545 ProSiteProfiles Protein kinase domain profile. 264 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02050 545 ProSiteProfiles PAN/Apple domain profile. 85 165 IPR003609 -
Seca2g02050 545 Pfam S-locus glycoprotein domain 3 68 IPR000858 GO:0048544
Seca2g02050 545 CDD PAN_AP_plant 84 170 - -
Seca2g02050 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Seca2g02050 545 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Seca2g02050 545 PANTHER OS07G0415500 PROTEIN 3 540 - -
Seca2g02050 545 Gene3D Transferase(Phosphotransferase) domain 1 339 545 - -
Seca2g02050 545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 545 - -
Seca2g02050 545 ProSiteProfiles EGF-like domain profile. 33 71 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02050 Seca-Chr2 45283182 45284819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02050 254 542 Trihelix Transcription Factor Family AT5G38560 42.282 8.34e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca2g02050 Pkinase 9.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02050 - - gmx:100784287 845.114