Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02046 ATGAGCTGCTTTTCATGTTTCTCATCCCATGAAAAAAAAGTAGCAAAGAAGCCTAACAATGGAAAGAGGATACAACAGCATGCTACTCAATCTCCTAAAGAAGCAGCCCAACCTCAGCCAGAGAAGGTAAGGGCCAGCCCACAAGCAGAACCTAAAATAAATAAGGAGGCAAACAAAGAGACTGGGAACAGTAACATTGCAGCCCAAACATTCACCTTCAGGGAATTGGCTGCTACCACAAAGAACTTTAGGCAGGAAAATCTTATAGGTGAAGGTGGATTTGGGAGGGTGTATAAAGGAAGACTTGAAAGAACAAACCAGGAAGTAGCTGTGAAGCAACTAGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTAATGTTGAGCCTCTTGCACCATCAAAATCTAGTGAATCTAATTGGATATTGTGCAGATGGAGATCAGAGATTGTTGGTATATGAGTACATGCCATTGGGATCTCTTGAGGACCATCTACTTGATCTTCCTCCACAAAAAAATCCTCTGGATTGGTTCACCAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCCAACCCTCCAGTCATCTACCGTGACTTAAAATCCTCCAACATCTTGCTGGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGACTAGCCAAGTTGGGACCTACAGGGGACAAGTCTCATGTCTCTTCAAGAGTAATGGGTACTTATGGGTACTGTGCCCCTGAGTATCAAAGAACTGGTCAGCTCACAGTAAAATCAGATGTATACAGCTTTGGTGTTGTTTTGCTTGAATTGATCACTGGAAGAAGAGCCATTGACAACACAAGACCAGCAAAGGAACAAAATCTAGTTTCTTGGGCATATCCAGTATTTAGGGACCCTCATAGATACCCACAATTAGCAGATCCCCTTCTTCAAGGAAACTTCCCAATGAGATCACTACATCAAGCAGTGGCAGTAGCAGCGATGTGTCTGAATGAAGAGCCATCAGTGAGGCCGTTGATTAGTGATGTTGTGACTGCTCTTAGTTTCCTTGGGACAAATCCAGGGTCACAAGACCCTATAGGAATTGCACCAGTTGACATGCCCTCCCCAACAACCCCAGAGCAAGAAGAAGAAGAAGAAACTAGTGCCACTTTGAATCTTCTTGACGATGATAGTGCCATGGAACGCCAAAGAGCAGTTGCTGAAGCAATTGAATGGGGTTCAAATACTAGGAACAAAGCACAACGGCGTGATAGTGCTTCCTCATTGTAA 1302 0.4324 MSCFSCFSSHEKKVAKKPNNGKRIQQHATQSPKEAAQPQPEKVRASPQAEPKINKEANKETGNSNIAAQTFTFRELAATTKNFRQENLIGEGGFGRVYKGRLERTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPPQKNPLDWFTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRPAKEQNLVSWAYPVFRDPHRYPQLADPLLQGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGTNPGSQDPIGIAPVDMPSPTTPEQEEEEETSATLNLLDDDSAMERQRAVAEAIEWGSNTRNKAQRRDSASSL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02046 433 SUPERFAMILY Protein kinase-like (PK-like) 69 390 IPR011009 -
Seca2g02046 433 Pfam Protein kinase domain 84 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02046 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Seca2g02046 433 CDD STKc_IRAK 89 357 - -
Seca2g02046 433 FunFam Serine/threonine-protein kinase PBS1 56 159 - -
Seca2g02046 433 PANTHER OS07G0668900 PROTEIN 3 366 - -
Seca2g02046 433 MobiDBLite consensus disorder prediction 414 433 - -
Seca2g02046 433 Gene3D Transferase(Phosphotransferase) domain 1 160 366 - -
Seca2g02046 433 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Seca2g02046 433 MobiDBLite consensus disorder prediction 1 61 - -
Seca2g02046 433 SMART serkin_6 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02046 433 FunFam Serine/threonine-protein kinase PBS1 160 370 - -
Seca2g02046 433 Gene3D Phosphorylase Kinase; domain 1 52 159 - -
Seca2g02046 433 MobiDBLite consensus disorder prediction 418 433 - -
Seca2g02046 433 MobiDBLite consensus disorder prediction 22 36 - -
Seca2g02046 433 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02046 433 MobiDBLite consensus disorder prediction 365 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02046 Seca-Chr2 44854159 44858340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02046 1 432 Glycoside Hydrolase AT3G07070 66.359 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca2g02046 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02046 - - gmx:100786405 725.317