Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02037 ATGACTACAATACCAAGTATTGGCATGGAATTTGATTATGTAGATGAAGCTTGGGAATTTTGGCATGAATATGGTAAAAAAATTGGCTTTGGTGTTAGAAAACAATACTTCAACAAAAGGAAGAAAGATGGCTCGATTAGATCATGCAGGTTTGTTTGTTGCAAGGAAGGTAAGGGAACATCGGACAAGAGATCTTTTTTAGTTGAGAATCTTAGGGTTGAAACAAGAACTGAGTGCAACGCAAGAATAGCTCTTAGTGAAAAGAATGGGAAGTTTGTCATCCATGAGTTCATAGAGGACCATAACCACCCTTTACAACTTGTAGAAACAACACATATGTTAGCATCATACCATAAAATTTCTAAAGCTCAAGCATATGAGATTGAAATGGCAAAAGACTCTGGATTGATGCAAAAGGCCTCATTTCAACTTATGAGCACACATGTAGGAGGTAGAGCTAATCTCGGATATACAAGGTTGGATGCTAAGAACTATCTCAAAGTAAGAAGACAACGTAGTATGGTGTATGGGGAAATCGGTGGTCTTATGCAGTATTTTCGGCACCAATTGTTGGAGAATCCCTCATTTTACCATGCATATCAAATGGATTGCGATGAACAAATCACAAATGTATTTTGGGTTGATGCAAAAATGATCTTGGATTATGGATATTTTGGTGATGTGGTCTCTCTGGATACAACCTATTGCACTAATCATGCTAATAGACCTTTGGCTTTGTTTTCAGGCTTTAATCAATACAGGGGTGTAGACATTTTTGGGGCTGCTTTATTATATGATGAAACAAGTGAATCATTCAAATGGTTATTCGAAACATTTCTTAAAGCACATGGGAATAAAAGGCCTCGAACTTTGTTCACTGACCAATGTCAAGCGATGGCCAAAGCACTAGCTGAGGTGATGCCAGAGACTCGACATGAGTTATGTACATGGCACTTGATGCAAAATGGGATTAAGCACCTTGGTAATTTGATGAAGAAAGGGAGCCATTTCTTAACTGAGTTTAAGAAGTGCATGTATGATTATAACCAAGAAATGAAGTTTGAGGCAGCTTGGAGCAAATTGGTTGCAGAATTTAATATCAGTGAGAATGATTGGGTGAAATCAATGTATGAAATAAAGGAAAAATGGGTAGCATGTTACATGAAGGAAGCATTCACCCTAGGGATGCGAAGCACTCAACTTAATGAGAGCTTGAACTCAGATTTTAAGGCATGCATGACACCTAATATCAATGTCATTCAATTCTTCAAGCACTTTGAGAGAGTGGTTGAGGAGAAACGATACAACGAGTTAGTTTGTGAATATGAGTCTCAACATAAACTTGCAAAGTTAACATACAGACATTCACCAATTCTAGTGCAACTCGCACAAGTATACACACCAAAATTTTTTTACTTGTTCCATGATGAGTTTGGGTTATTCTTAGCAGCTTGCATATGTGAAAGAAATGTATCTCAACTTCCATTTGAATATGTTATCACCTTGTTCAATGAGGAAGGAGAATGGAGAGTGTTATATGATCCTATACACTTCTCCATATCATGCACTTGTAGGAAATTTGAGAGTTTTGGGATACTTTGTTGCCATGCGTTGAAGGTTTTTTAG 1626 0.3733 MTTIPSIGMEFDYVDEAWEFWHEYGKKIGFGVRKQYFNKRKKDGSIRSCRFVCCKEGKGTSDKRSFLVENLRVETRTECNARIALSEKNGKFVIHEFIEDHNHPLQLVETTHMLASYHKISKAQAYEIEMAKDSGLMQKASFQLMSTHVGGRANLGYTRLDAKNYLKVRRQRSMVYGEIGGLMQYFRHQLLENPSFYHAYQMDCDEQITNVFWVDAKMILDYGYFGDVVSLDTTYCTNHANRPLALFSGFNQYRGVDIFGAALLYDETSESFKWLFETFLKAHGNKRPRTLFTDQCQAMAKALAEVMPETRHELCTWHLMQNGIKHLGNLMKKGSHFLTEFKKCMYDYNQEMKFEAAWSKLVAEFNISENDWVKSMYEIKEKWVACYMKEAFTLGMRSTQLNESLNSDFKACMTPNINVIQFFKHFERVVEEKRYNELVCEYESQHKLAKLTYRHSPILVQLAQVYTPKFFYLFHDEFGLFLAACICERNVSQLPFEYVITLFNEEGEWRVLYDPIHFSISCTCRKFESFGILCCHALKVF. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02037 541 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 541 IPR031052 GO:0006355
Seca2g02037 541 Pfam MULE transposase domain 228 322 IPR018289 -
Seca2g02037 541 Pfam SWIM zinc finger 519 541 IPR007527 GO:0008270
Seca2g02037 541 Pfam FAR1 DNA-binding domain 19 106 IPR004330 -
Seca2g02037 541 ProSiteProfiles Zinc finger SWIM-type profile. 498 541 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02037 Seca-Chr2 44499994 44501619 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g02037 MULE 2.2e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02037 - - smil:130990021 707.212