Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02027 ATGCCGAAAAACTTGATGATGAAATTTTCTCAGATAGTAGCTGAGAGGGAGGTTTATAGGCTCTCCAATTTTGCTCTGACAGAGAATTCGGGGAAGTTTCGGGCAGCCCATCACGAATTTAAGATCGTGTTTAATGGAGGGACCAAAATGATACGCTGTCCTTCAGTTAACATCCCGGTATCTGGGTTCTCATTGCTGAAAACCTCAGACATAAACAAGACTAATGGTTGTTCTGACTATCTCTTTGATTTTATGGGTGTCCTCACGGCTGTTTCCGAGGAGATAACGATGAAGAAGCAAGGCAGGGAGACAAGGCTGATTCTGCTTGATTTAGTTGACGAAATGGGCTCCATCAGATGTGCAGTATTCGGTGATATGGTGGATGTTGTTGCTGGCTTTCTGACCGTGCCAAGAGACGGGTTGCCCGTCCTAATCATCCAGTTAGCCAAAGCCAATATATATAAGGGCCAAGTTGGCATTCAGAATGTGATGAATGCAACAAAGTTTTACTGGAACCCTGACTTAGCAGAGGCCATTGAGTTTAAGAATGGGCTTGCTGTGCATGAAGTGGAGCCTGAACTAGCGATTGGTTTCATTAGCAACAGATCTAGACAGGTCTCAATGAAAGAAGAGTTCCTTACTATTTATCCAAGGAAGCCTATTGGAAAACTTAGCGTTAATAGCGAGGATGGTGCTTTCATTATTCTGGGGGTGATTGATGAAGTGTTGCAGGAAGAGAATTGGTGGTACATGGCTTGCACTTGCATGAAAGCTTTATCATTTGATTATGGCTTACCCTACTGTCGTGATTGCGAAAAAGTTTTGTTTGAAATGAACCCAAGGTTTAAGATAAAGATTCTGGTCACGGATGGTGAGGACTGGGTGCCGTTATTATTGTGGGACTCAGAATCCTATTCTTTAATGAACAAGAACTGCAGGGAATTGCTTTCTGAGATTAAGGGTGACCCAACTGAGTGCTACCCGTGTAATATATTGGATCTAATAGGCCAGGAGTTCCTCTTTCGAGTAGAGAGGAAGGAGGATGCAAAGTTTGTGAGTGAAGGAAGTTATGTTGTCAGAAGGGTGTGTGCTGATCAAAGTGTTATTGATGAGTTCAAAGGTGTAGTTGATGAAGAGACACCCTTGAAGAACAAGTTTGAACCTGCTTTCTCAAAATTGGGAGGCTGCGAACCAAGTGCATGTGTGCTGGAGTTGACACCACAAAGCAACTCTGTTCTTACTGATACTGATGTTAGCCACAATTCATCCACCCCATCCACAAATCATGCAGGGGCTTCTGTTGCTGTGATTAAAGTGCAAGGTGAACCAATAGCAGATGCTCCTGCTGAGGTGAAAAGGAGAACTAGGGTCAGAAGCATCAAGCTGGAAAGAACTTAG 1398 0.4356 MPKNLMMKFSQIVAEREVYRLSNFALTENSGKFRAAHHEFKIVFNGGTKMIRCPSVNIPVSGFSLLKTSDINKTNGCSDYLFDFMGVLTAVSEEITMKKQGRETRLILLDLVDEMGSIRCAVFGDMVDVVAGFLTVPRDGLPVLIIQLAKANIYKGQVGIQNVMNATKFYWNPDLAEAIEFKNGLAVHEVEPELAIGFISNRSRQVSMKEEFLTIYPRKPIGKLSVNSEDGAFIILGVIDEVLQEENWWYMACTCMKALSFDYGLPYCRDCEKVLFEMNPRFKIKILVTDGEDWVPLLLWDSESYSLMNKNCRELLSEIKGDPTECYPCNILDLIGQEFLFRVERKEDAKFVSEGSYVVRRVCADQSVIDEFKGVVDEETPLKNKFEPAFSKLGGCEPSACVLELTPQSNSVLTDTDVSHNSSTPSTNHAGASVAVIKVQGEPIADAPAEVKRRTRVRSIKLERT. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02027 465 SUPERFAMILY Nucleic acid-binding proteins 63 186 IPR012340 -
Seca2g02027 465 Pfam Domain of unknown function DUF223 5 55 IPR003871 -
Seca2g02027 465 SUPERFAMILY Nucleic acid-binding proteins 223 348 IPR012340 -
Seca2g02027 465 Gene3D - 1 55 IPR012340 -
Seca2g02027 465 Gene3D - 56 190 IPR012340 -
Seca2g02027 465 Gene3D - 200 364 IPR012340 -
Seca2g02027 465 CDD RPA1_DBD_B_like 83 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02027 Seca-Chr2 44106724 44108971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02027 5 182 Core DNA Replication Machinery Family AT2G06510 27.027 1.29e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02027 - - lja:Lj6g3v0884310.1 309.686