Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02012 ATGGTGATGAAGTCTATCATCCCTGTTGTTATGGTTGGAGTTTTGAGTATATATGGCCTTATTATTACTGTTATAATTAGTATTGGTGTTAATCCCAACTCCAAATCTTATTACCTATTTGATGGTTATGCCCATGTCTCATATGGTCTTGCCCGAAGGCTGGCTAGCCTCTTTGATGGCATGGTTATTGGTATTGTTGGTGATGCTGATGTTAGGTATAATTCTTCTGCCTTAGTATCTGATCCTTGA 249 0.3815 MVMKSIIPVVMVGVLSIYGLIITVIISIGVNPNSKSYYLFDGYAHVSYGLARRLASLFDGMVIGIVGDADVRYNSSALVSDP. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02012 82 Gene3D - 1 79 IPR035921 -
Seca2g02012 82 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 75 - -
Seca2g02012 82 NCBIfam V-type ATPase subunit C 1 71 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca2g02012 82 PRINTS Vacuolar ATP synthase 16kDa subunit signature 57 82 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca2g02012 82 PRINTS Vacuolar ATP synthase 16kDa subunit signature 6 30 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02012 Seca-Chr2 43697978 43698226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02012 1 76 Primary Pumps ATPases(2) AT4G38920 72.368 6.10e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02012 K02155 - csin:114292490 109.383