Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02009 ATGGTATTTTTAAGGTTAAGGTTTCTTTCTGACCCTACTCTTCTTCTTTGCTTTCCCTCACAGACACAGTCAAGGCTATTCTCTCACTCTCAGCCCCCATTCATTCCCAATGTTGATGATGCCATTTCCTCATTCACTCGCATGCTCCAAATGCGTCGTACCCCACCCCTCCTCGAATTCAACAAGATCTTAACTTCCCTTGTTAAGTTGAAGCATTACCCAACTGCTATTTCCCTTTCTCATCAAATGGAATTCAGGGGAATTAAGCCAAACTTTATTACTTTGAACATCTTGATCAACTGTTTCTGCCACCTCCGTCAAATGACTTCTTCCTTTTCTTTATTTGGAAAAATTCTCAAGAGCGGTTATCAGCCAGACACCGCAACCTTTAATACCCTTGTAAAAGGTCTCTGTCTTAATGGTGAGCTTAGAAAGGCACTGCACTTTCATGACGAAGTGGTAGCACAGGGATTTAAATTGGACCACGTTAGTTATGGGACCTTGATCAATGGGTTATGTAAAATGGGAGAAACAAGAGCTGCCCTCCAGCTGCTGAGAGATATTGAAGAGCAATCGGTCAAGCCTAATGTGGTAATCTACAGCACAATCATTGATAGCCTGTGTAAAGATAAACTTGTAAATGATGCCTGTGATTTATATTCTGAAATGATTGTCAAGAGAATTTCACCTAATGTTGTCACTTACAATGCTCTAATATATGGCTTTTGCATTGTGGGTCAATTGAAAGAAGCATTTGGTTTGTTAAATGAAATGGTATTGAAAAACATCAACCCAGAGGTTTATACATTTACTATTTTGGTTGATGCTTTATGCAAGGAAGGAAAGATGAAAGAAGCTAAAAGCATATTAGCATTGATGTTGAAAGAAGGTGTGGAACCAGATGTTGTTACTTACAGTTGTTTAATGGATGGGTATTGCTTAGTTAATGAACTGAACAATGCAAGATATGTGTTCAACACTATGACCCGGAAGGGAGTGACTCTTGATGCTCACAGCTATAACATCATGATTAATGGATTATGTAAGATTAAAATGGTGGATGAAGCCATGAATCTCTTTGAAGAAATGCAATCCAAAAATATGATCCCTAATACGGTAATTTACAGTTCTCTTATTGATGGTTTGTGTAAGTCAGGGAGAGTCTCTAATGCTTGGGAGCTTTTTGATGAAATGCATGATAGAGGTCTACCAGCTGATGTTATCACTTACAATCCTTTATTAGAAGCTTTATGCAAAGCCCATCATGTTGACAAGGCAATTGCATTATTAATGAAAATTATAGAGAAGGGTATTCGTCCAGATGTGTGTATGTACACTATAATTATTGATGGACTATGCAAATGTGGAAGACTTAAGAATGCACAAGAGGTTTTTCAAGATCTGATGATTAAAGGCTATGATCTAAATGTTCGTACGTATAACGTTATGATCAATGGCTTTTGTAAAGAGGGCTTATTTGATGAAGCATTTGCCTTAAAGTCAAAAATGGAAGACGAGGGTTGCTTTCCTGATGTTATAACTTATGAAGTTGGAGATTTTGGATTATCAAGAATTAAATGTAATACCCTTGTATCAGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACTAGAGCTGTTGAATGGTAATAGTATCTGGGTTTTTGATATTGTTAATGCTTTCTCATTTGTCATCTCAATGTGGGAGTTACTGTCAGAGGAGGATCCTTTTGCAGATATGCATTGCGCTATGATTGGTATCTGTAAGGGATACGAAAGTGGAGCTATTAACTCTGTAAGAGCTTTGTTCTGA 1812 0.3791 MVFLRLRFLSDPTLLLCFPSQTQSRLFSHSQPPFIPNVDDAISSFTRMLQMRRTPPLLEFNKILTSLVKLKHYPTAISLSHQMEFRGIKPNFITLNILINCFCHLRQMTSSFSLFGKILKSGYQPDTATFNTLVKGLCLNGELRKALHFHDEVVAQGFKLDHVSYGTLINGLCKMGETRAALQLLRDIEEQSVKPNVVIYSTIIDSLCKDKLVNDACDLYSEMIVKRISPNVVTYNALIYGFCIVGQLKEAFGLLNEMVLKNINPEVYTFTILVDALCKEGKMKEAKSILALMLKEGVEPDVVTYSCLMDGYCLVNELNNARYVFNTMTRKGVTLDAHSYNIMINGLCKIKMVDEAMNLFEEMQSKNMIPNTVIYSSLIDGLCKSGRVSNAWELFDEMHDRGLPADVITYNPLLEALCKAHHVDKAIALLMKIIEKGIRPDVCMYTIIIDGLCKCGRLKNAQEVFQDLMIKGYDLNVRTYNVMINGFCKEGLFDEAFALKSKMEDEGCFPDVITYEVGDFGLSRIKCNTLVSGGVRGTLPWMALELLNGNSIWVFDIVNAFSFVISMWELLSEEDPFADMHCAMIGICKGYESGAINSVRALF. 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02009 603 SUPERFAMILY TPR-like 195 467 IPR011990 GO:0005515
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 328 400 IPR011990 GO:0005515
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 401 469 IPR011990 GO:0005515
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 470 525 IPR011990 GO:0005515
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 191 259 IPR011990 GO:0005515
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 260 327 IPR011990 GO:0005515
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Seca2g02009 603 Gene3D Tetratricopeptide repeat domain 36 190 IPR011990 GO:0005515
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 233 265 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 479 512 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 303 336 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 198 232 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 163 197 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 268 302 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 444 476 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 129 161 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 338 372 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 408 442 IPR002885 -
Seca2g02009 603 NCBIfam pentatricopeptide repeat 93 127 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Seca2g02009 603 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 265 554 - -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 230 279 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 60 104 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 302 349 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 370 419 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 125 174 IPR002885 -
Seca2g02009 603 Pfam PPR repeat family 440 489 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Seca2g02009 603 SUPERFAMILY Protein kinase-like (PK-like) 516 583 IPR011009 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Seca2g02009 603 Pfam PPR repeat 193 223 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Seca2g02009 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02009 Seca-Chr2 43544805 43554278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02009 40 520 Glycosyltransferase AT1G05670 28.747 2.40e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca2g02009 PPR_2 2.9e-10 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02009 - - cam:101506267 697.197