Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02008 ATGGCACTAAATAAGACAGGAATAGGTACCAAAACTGGGAAGGATCCTGGCTTGTTTCCTCAATACAACCAACCAGAATTACCCAGTGGTGTTTCCAATGCAGGACATAATGTACATGATAATATCTCTATGCAGGCAGGGGAAGAATTTTCTGTGAATTTTGGTCATGATGGAATTGCTGCTGCAAGAGTTCCTGCTTTGCCTGATATATCTCGAAACAGTGGGAATAGGTTTGGGTTGACTAGGGAGAATGGTCATGTGAGATATGAAGATCTTACTAATATTTTGGGGTTGAGGAGAATGGATTCTGAGAGTTCTTCTGATATAGCTGACTTTATCTCTATAAAACTGCCAGCACAGGAGATGGAAAATGGGGCTTCTGTAAATATTTTAAGCAAAATTCAAAAGGGAGATGGTGACAGTGGCCATGCATTGAGGAAGGCTGTTCGTGAATCAGTTGGTGACCAAGCTGGTATTGGATCAGCTGTACCAATACCACCCCTTCGCAGAAATGAATCTTCTCTGTCCAATGGATTTTCTGGTTCAGGAATTTTAGATGATTCTCTGTCAGGGAAAATGAAGTTTCTATGCAGCTTTGGTGGCAAAATATTACCAAGGCCCAGTGATGGGAAACTAAGATATGTAGGAGGAGAAACCCATATTATATCTATCCAAAAGGATATTTCATGGGCAGAGCTTGTGAAGAAGACCTTAGGTATTTGCAGTCAACCTCACACAATCAAATACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGACGAGGATCTTCAAAATATGATAGAGGAATACTATGGGCTTGAAAGCCATGAAGGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCTGAAGAGACATCATCAACTGAGGCAAGCACCGTTCAACAGAATGATCCTGATTACCAATATGTTGTTGCTTTAAATGGTATAGTAGACCTTAGTCCCAAGAAAAACATTGGTGGACAGAGCATGACAAATGAAGCAAGTCAGCCAGGGACAAGTTTGAATGTTGCTCCAGTTTTTCAGAAAAATTCTCCAAATGCATCTTCTCCTTTGGAGACCAGGGATGGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCCCTAAATCTGCAAAAGCCCTTGCCAATTTCTCCTACTCCAGTTCAAGTTGCAGGTTCTAGCACAGGTTATATACAATTGCTTAGTAACAACTCGTGCCAGGGAAGTATTGAGAGCAACAAATCATTTGTCACTACTCAGCTACACCCAGAGAACTCCAGCATAAGCACTGCTGATTGCAGATACCCTAAAAATGTAGCTGTTACTTTGTCAGGCGACAGTCACCCTTATCAACATGGTGATGTTAGTCAGCCTCAGAAGCTCAATAGACAGTATTTTGACAACTACAATCCGGACAAGGAATTAATTACTCCTGTATATGTTAACTCAAGTGATGGTTACAGTAATGAAGTTTTTGGTGGAAGGTCCTTGCATAAGGATAGAAGTTTCTATGCTGGAAATCCTCTTTCGTGCTTGGATGATCCAATCCGTCAACAGGCTGAATCTTATGGAATTACTGACTCCTCTCATGCGATGCCTCATGCTTTTTCTGATTCACAGTTGCAAGAGAGTGGAGCAAGGTCTGGTTACAGCTCACAAGAAGGAATTGGCCAATCTTTCTCCTTGAACCTTGAAAAGGCTCAATTATCTTCAATGTTAGCCTTTGGTGTCTCACAAGTGAACCTTTTGGAGTGTCAGAATGATTCCATTTTCTGTCATCCTCAAATACAAAAAAAGATACCAAAAGTGGAGTCAGCTGAGCAGCACAGATGGCAAAATTTGGCATCTTCTTCCCCATACTCAGAATCATTAGGAATGAATGATCCTATTCATAAGGATAGCCTCTTAACTGAAAAAGGGTACCTTATTGCTCAAACTGACTTAAGTGGATCTAGCTTTATAGCAAAGAATATTGAAGAAAGTCCTGTGAGATTAGAAAGGATGAAGATAACTGAAGAAAACTGTCCTATTCCCAAGAAGGATAGCAAGGTTTATGAGGGGAAATCAACTGTCATTGATATGGGACAGGTGACTGAATTGCATGTTTTAGACTCCTTCACTGCTAAGATTGGTATGCAAAAGAATTGGGAACTACCTTCTGAGGAGATACATCCTTCATCATCATGCATGATGGGATTCTCTCTAAATAATCTTGTGGACAAGACGACGTCTAATCTGCATGAGATGAGCCAAAAGGCTAGTGATGTCAACAAATGTGCTATGGCTGAAGGTCTGAATGGTGAAAAAGGAAATGATTTTCCATTGACCAGAAATTTTGATTTAAATGCTCCAATAATAACATGTGAAGAAAGATTTTACAATAAAAGTTCTGCTAGAGATCATATATTCAAGCTGCCCATTGACCCAGATTCTTTTAAATCTGCACAAATTCAGCCTTCTCAGAATCAGACTGCTACAGGTTTTCATCATAATCCAACAGTGAGCTCTGAAAGTTTGTATCCTGCTGTACTTCGTGATGACTTCGGTCCAGGTTTTGACATGCCAGTGTATGGCCTGGATAATACAAGCAAGAATATTTCTTCTAAAAAGGAACCTTTTTTTGATCACTTGATTACCTGCACTGATAAAATGGTAGATCAGTTTATCCATGAACACTCGACCCCTGGACAGTTAAAAGTTGAAGATATAATTTCGGGACAATCAAAAAATTTAGAAAGGTATAATGATGCAAATCGAGTGGAGCCATTTGTCTTAGGAGAAGACATGACTGGTGTTGTTTCTCCATATAGTGAGTCTTCATCAGTACGCACCCCACATATTTTCGATGAAGTTGGAAGTGATGTATCTCCATCTCATACAGAAACAGAGAGCATCATCCCTGAGTCTGAACTTGAGGATTTTAAAGATGATCAGACAGACAAGAATGAATTCCTTTCTGATGCAATGATAGCAGAAATGGAAGCCAGCATATATGGTTTGCAGATAATAAGGAATGCTGATCTCGAAGATCTTATGGAGTTAGGGTCTGGTACTTATGGAACTGTTTATCATGGAAAGTGGCGGGGAACAGATGTTGCTATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCTTCTGAGCAAGAACGTTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCAGATGGGGCTGGTGGAACCTTAGCAACTGTAACAGAGTATATGGTTAATGGGTCCCTTAGGCATGTCCTTGTCAAGAACCACAGATTACTAGATCGTCGTAAAAAGCTAATAATTGCGATGGATGCTGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTCAATCTAAGGGATCCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGTAATACCCTTGTATCGGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGTAATAGTAGCCGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATCTCAATGTGGGAGTTACTGACAGGGGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACTCTTCGACCACCTGTTCCAGAACGCTGTGATCATGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGATCCCGAAAGCCGGCCATCATTCACAGAGATAACTAGCAGGTTACGATCTATGTCTATGGCATTTCAAGCTAAGGGGAATTATCAGGCATGGCAGTTAAGACCTGGTACTTCTTGA 3915 0.4041 MALNKTGIGTKTGKDPGLFPQYNQPELPSGVSNAGHNVHDNISMQAGEEFSVNFGHDGIAAARVPALPDISRNSGNRFGLTRENGHVRYEDLTNILGLRRMDSESSSDIADFISIKLPAQEMENGASVNILSKIQKGDGDSGHALRKAVRESVGDQAGIGSAVPIPPLRRNESSLSNGFSGSGILDDSLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIQKDISWAELVKKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYYGLESHEGSQKLRIFLVPLGESEETSSTEASTVQQNDPDYQYVVALNGIVDLSPKKNIGGQSMTNEASQPGTSLNVAPVFQKNSPNASSPLETRDGINALNPDGILNDSLNLQKPLPISPTPVQVAGSSTGYIQLLSNNSCQGSIESNKSFVTTQLHPENSSISTADCRYPKNVAVTLSGDSHPYQHGDVSQPQKLNRQYFDNYNPDKELITPVYVNSSDGYSNEVFGGRSLHKDRSFYAGNPLSCLDDPIRQQAESYGITDSSHAMPHAFSDSQLQESGARSGYSSQEGIGQSFSLNLEKAQLSSMLAFGVSQVNLLECQNDSIFCHPQIQKKIPKVESAEQHRWQNLASSSPYSESLGMNDPIHKDSLLTEKGYLIAQTDLSGSSFIAKNIEESPVRLERMKITEENCPIPKKDSKVYEGKSTVIDMGQVTELHVLDSFTAKIGMQKNWELPSEEIHPSSSCMMGFSLNNLVDKTTSNLHEMSQKASDVNKCAMAEGLNGEKGNDFPLTRNFDLNAPIITCEERFYNKSSARDHIFKLPIDPDSFKSAQIQPSQNQTATGFHHNPTVSSESLYPAVLRDDFGPGFDMPVYGLDNTSKNISSKKEPFFDHLITCTDKMVDQFIHEHSTPGQLKVEDIISGQSKNLERYNDANRVEPFVLGEDMTGVVSPYSESSSVRTPHIFDEVGSDVSPSHTETESIIPESELEDFKDDQTDKNEFLSDAMIAEMEASIYGLQIIRNADLEDLMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNHRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDHEWRKLMEECWSPDPESRPSFTEITSRLRSMSMAFQAKGNYQAWQLRPGTS. 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02008 1304 Pfam PB1 domain 209 293 IPR000270 GO:0005515
Seca2g02008 1304 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 212 294 - -
Seca2g02008 1304 PRINTS Tyrosine kinase catalytic domain signature 1137 1155 IPR001245 GO:0004672|GO:0006468
Seca2g02008 1304 PRINTS Tyrosine kinase catalytic domain signature 1100 1113 IPR001245 GO:0004672|GO:0006468
Seca2g02008 1304 PRINTS Tyrosine kinase catalytic domain signature 1252 1274 IPR001245 GO:0004672|GO:0006468
Seca2g02008 1304 PRINTS Tyrosine kinase catalytic domain signature 1208 1230 IPR001245 GO:0004672|GO:0006468
Seca2g02008 1304 CDD STKc_MAP3K-like 1024 1281 - -
Seca2g02008 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1280 IPR011009 -
Seca2g02008 1304 Gene3D Transferase(Phosphotransferase) domain 1 1106 1300 - -
Seca2g02008 1304 Gene3D Phosphorylase Kinase; domain 1 1011 1105 - -
Seca2g02008 1304 CDD PB1_UP2 196 291 - -
Seca2g02008 1304 Gene3D - 211 293 - -
Seca2g02008 1304 SMART serkin_6 1018 1287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02008 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1143 1155 IPR008271 GO:0004672|GO:0006468
Seca2g02008 1304 MobiDBLite consensus disorder prediction 338 367 - -
Seca2g02008 1304 SUPERFAMILY CAD & PB1 domains 208 298 - -
Seca2g02008 1304 MobiDBLite consensus disorder prediction 1 29 - -
Seca2g02008 1304 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1011 1105 - -
Seca2g02008 1304 SMART PB1_new 207 294 IPR000270 GO:0005515
Seca2g02008 1304 PANTHER SERINE-THREONINE PROTEIN KINASE 242 1284 - -
Seca2g02008 1304 Pfam Protein tyrosine and serine/threonine kinase 1022 1281 IPR001245 GO:0004672|GO:0006468
Seca2g02008 1304 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1106 1297 - -
Seca2g02008 1304 ProSiteProfiles Protein kinase domain profile. 1018 1288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02008 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1024 1049 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02008 Seca-Chr2 43498543 43508227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02008 189 332 MAP Kinase Kinase Kinase AT1G16270 59.028 1.74e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca2g02008 PK_Tyr_Ser-Thr 1.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02008 - - aprc:113862751 1868.2