Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02005 ATGGAAGATGAGGATAAGGTAGTCAAAGTTGGAGAAAGCCAAGGAGAAGAAGGGACATCAAGAATCTTTCCATGTCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTAGGGGGACACCAAAATGCTCACAAGAAAGAGAGGACAGCTGCAAGGAAGGCTAAGAGGGCTTCTGAGTACTCATGTGTTTCCTTTGCTTCTCCACTGCCAACCCCTATGGTTTTTGCTCCAACCAATCAACTAGGTATTTTAAATCCTTCAATGTTCATCACAGCTCATGCAGCAAATCTCCCTTGTCTCTCAAGCCATCAAATTTCAGAAAAATTTGGATCAAGTGGTGCACCTAGATTTAGCAATGAGCTGCTTTATGGGGTAAGTTGTTCAAAAAGTCAATTTTGTGATGAAGATGGAAGAGGTTTCGTTAATTGGCAAGAGAGTATAAGATGTAATAACTTTGACAACAACGATACATCTCATGTCTCATTGACAAGTAACAATCAAAATCTTGGAATTCAGAAAAATGGTACAGAGAAACTTGATTTGTCTCTTCATTTGTAG 561 0.3886 MEDEDKVVKVGESQGEEGTSRIFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRASEYSCVSFASPLPTPMVFAPTNQLGILNPSMFITAHAANLPCLSSHQISEKFGSSGAPRFSNELLYGVSCSKSQFCDEDGRGFVNWQESIRCNNFDNNDTSHVSLTSNNQNLGIQKNGTEKLDLSLHL. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02005 186 SUPERFAMILY beta-beta-alpha zinc fingers 20 50 IPR036236 -
Seca2g02005 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Seca2g02005 186 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Seca2g02005 186 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 186 IPR044246 GO:0009788
Seca2g02005 186 Gene3D Classic Zinc Finger 3 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02005 Seca-Chr2 43385108 43385668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02005 15 54 C2H2 Transcription Factor Family AT5G14010 65.000 1.26e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02005 - - gmx:100527084 234.187