Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02004 ATGGTGGTGATAGAGCAACAGGAGTGTGATGATCGAAACGAGAACCCCTCTAACGCCGGTGGCGGGAACGACGTTTCTGACGGCTTTGAAACCGCCAGCGACGCCGATCTCGGTAGCGACGCCGAAGCCGACGGAAACGACAGTGGAGCTATCAGCCAGGAAGGACCGGAGCATAGTGGGCAGCAACAGCAACAGCAGAAGCAGACAGAACAAGAGCAAGAACAGGACCTTGGTGATCCTCAGAGAAGCATTTCCTCCGAAAACGCCTCGATCAATGAGGAAGAGTTGAGACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCACAATATGAACTTGCTTTACAAGTTGCACCAGACATGCCTTCATCTATGGAAATACGCTCAATATGCCATGCTAACCGTGCTGTGTGCTTTCTTAAACTGGGAAAGTATGAAAACACAATTAAAGAATGCACAAAAGCACTAGAACTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGTCGACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGTCAAACTGAAAGAAATGGGCAACTCTGTCCTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCCAACACTGGTTCCTACTCTATCTCATTCCAACGCTAA 831 0.4573 MVVIEQQECDDRNENPSNAGGGNDVSDGFETASDADLGSDAEADGNDSGAISQEGPEHSGQQQQQQKQTEQEQEQDLGDPQRSISSENASINEEELRQKALVQANEAKVEGNKLFVDGKYEEALSQYELALQVAPDMPSSMEIRSICHANRAVCFLKLGKYENTIKECTKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIVKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02004 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 5 276 - -
Seca2g02004 276 MobiDBLite consensus disorder prediction 1 84 - -
Seca2g02004 276 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Seca2g02004 276 ProSiteProfiles TPR repeat profile. 104 137 IPR019734 GO:0005515
Seca2g02004 276 SUPERFAMILY TPR-like 104 222 IPR011990 GO:0005515
Seca2g02004 276 SMART tpr_5 104 137 IPR019734 GO:0005515
Seca2g02004 276 SMART tpr_5 145 178 IPR019734 GO:0005515
Seca2g02004 276 SMART tpr_5 179 212 IPR019734 GO:0005515
Seca2g02004 276 MobiDBLite consensus disorder prediction 52 71 - -
Seca2g02004 276 Gene3D Tetratricopeptide repeat domain 58 241 IPR011990 GO:0005515
Seca2g02004 276 Pfam Tetratricopeptide repeat 180 212 IPR013105 -
Seca2g02004 276 Pfam Tetratricopeptide repeat 147 177 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02004 Seca-Chr2 43373593 43385054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02004 104 235 Calmodulin-binding Proteins AT3G25230 40.000 8.41e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02004 K24926 - gmx:100808386 391.349