Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01997 ATGATGGTGCAGTCTCCAATACGGTTCACTCTCTATGCTCTGTTTATCGCGCTGCTTTTGGCTTGCACCAATGCAATCAATGGCATTGAGAAACAGAAAGCCAAAGAATCAAGTGGTGTAGAGGTAGAAGGGAAATTGCCGATGCAGAGCTTGAAGAATTCGTCGATGGCGGAAAGGTCAAGCGATGCTTTTAACGAGCATGCAGTTGAAAATCCAGAAGAGATTGCTTCCATGGTTGATACTTCTGTGTCCCACATCTTCCAACAAGGTGGGGTAAGCCACATGAATGGGCTACCTCTCCAGCCTGTCTACAAGCATAAGCTCCAAACTGCATATCAGATCTGGACCATCCGCAATTACACGGAAAGAAGGAATCTGAATTTTTTCTCATGTGGGACCGGGAATCCAATAGATGACTGCTGGCGCTGCGACAAGCGCTGGTACCTCCGGCGAAAGCGATTGGCTGATTGCGCCATTGGATTTGGTCGCAACGCCATCGGTGGCCGCGACGGAAGGTACTACGTCGTGACGGACCCAAGTGACGACGACGCTGTGAACCCCAAACCGGGCACCCTCCGTCACGCCGTAATTCAAGATAGACCCTTATGGATCGTGTTCAAGAGGGACATGGTCATCACTCTTAAGCAAGAACTCATTATGAACAGTTTCAAGACCATTGATGGTCGTGGCGTTAACGTTCACATTGCCTATGGGGCATGCATTACGATCCAGTTCATTACCAATGTCATCATCCATGGTGTCCATATCCATGATTGCAAGCAGACTGGCAATGCCATGGTTCGTAGCTCCCCTTCGCATTATGGATGGAGGACACTCGCTGATGGTGATGGGATTTCCATCTTTGGGTCAAGTCACATTTGGATTGACCACAATTCGCTCTCCAATTGTGCAGATGGCCTTATTGATGCTATTATGGGCTCCACTGCCATTACCATTTCTAATAACTACTTCACCCACCACAACGAGGTTATGTTGCTGGGTCACAGTGACTCTTATGTCCGTGATAAGCAGATGCAAGTAACTATTGCATACAACCACTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGCGCCAATCCAACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTGTGAACCCTTTTGCCAAGGAGGTAACCAAGAGGGTGGATACAGGAGAACCCGTGTGGAGAAGTTGGAATTGGAGGTCTCAGGGAGACCTTTTGCTCAATGGAGCTTTTTTCACTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCATCATTAGTTGGTACCATTACCTCTGGTGCAGGTGTTCTTAACTGTCGCAGGGGTGTCATGTGTTAA 1452 0.4814 MMVQSPIRFTLYALFIALLLACTNAINGIEKQKAKESSGVEVEGKLPMQSLKNSSMAERSSDAFNEHAVENPEEIASMVDTSVSHIFQQGGVSHMNGLPLQPVYKHKLQTAYQIWTIRNYTERRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGVHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGEPVWRSWNWRSQGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLNCRRGVMC. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01997 483 Gene3D - 134 476 IPR012334 -
Seca2g01997 483 Pfam Pectate lyase 218 398 IPR002022 -
Seca2g01997 483 SMART amb_all 209 406 IPR002022 -
Seca2g01997 483 PANTHER PECTATE LYASE 18-RELATED 107 480 IPR045032 GO:0030570
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 281 302 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 425 449 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 454 477 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 157 174 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 181 206 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 361 380 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 383 402 IPR018082 -
Seca2g01997 483 PRINTS Pollen allergen Amb family signature 217 233 IPR018082 -
Seca2g01997 483 FunFam Pectate lyase 134 476 - -
Seca2g01997 483 SUPERFAMILY Pectin lyase-like 117 478 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01997 Seca-Chr2 43092572 43097694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01997 118 483 Polysaccharide Lyase AT4G13710 82.514 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01997 K01728 - gmx:100809277 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01997 2 43092572 43097694 Seca2g01997 2 43092572 43097694 ECH