Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01984 ATGCTCTTCTTCTTCTTCTTCTTTTGCTTCTGCACAGCCAGTACACCCACAAAGTCTTTGTCTCCATCTACTTCCTCTGATGTTGAGCTTCTCTTGGGAAAAATCAGAGCTTCATTGCAAGGTAACAGTGACAACCTTGTTTTGTCTTCATGGAACTCTTCTATACCACTTTGCCAATGGAGAGGCCTCAAGTGGGTCTTCTCCAATGGCTCTTCTCTGTCATGCAGTGACTTGTCTTCACCACTTTGGACCAGTCTTTCACTTTACAAGGACCCTTCTGTGCATTTGCTCTCTCTTCAGCTTCCATCTGCTAATCTCTCTGGTTCACTCCCTAGAGAGCTTGGGGAGTTCCCTATGCTTCAGAGTCTCTATCTTAACATCAATTCATTGAAAGGAGCCATCCCTCTTGAGCTTGGCTTTAGCTCCTCTCTCTCTGACATTGATTTGGGTGATAATATGTTGAGTGGGGCTCTTCCACCATCCATTTGGAATTTGTGTGAGAGACTTGTTTCCCTTAGACTCCATGGTAATTTAATCTCTGGGTCTGTTTCTGAACCAGCATTGCCTAACTCCTCTTGCAAGAATTTGCAATTTCTTGATTTGGGTAACAATAGGTTTTCTGGGAATTTCCCTGAGTTCATCACAACGTTTGGTGGGCTAACGCAGCTTGATTTAGGGAATAACATGTTTACAGGTACAATTCCTCAAAGCGTAGTTGGGCTAAAGCTTGAAAAATTGAATCTTTCCCACAATAATTTTAGTGGGGTTTTGCCATTCTTTGGAGAATCCAAATTTGGTGTGGATGCTTTTGAAGGGAATAACCCTGGCTTGTGTGGCCCACCTTTGACAAGTTGTACTAGGGCATCTACACTTAGTTCTGGTGCAGTTGCTGGTATTGTTATCAGTCTGATGACAGGTGCTGTGGTTTTGGCTTCTTTGCTGATTGGGTATATGCAAAACAAGAAGAGGAAGGGCAGTGGAGAGAGTGAAGATGATCTGAATGATGAAGAAGAAGATGAAGAAAATGGTGGTAGTGCTGTTGGTGGAGCTGGTGAGGGAAAGCTTATGTTATTCCCTGGAGGTGAGAATTTGACATTAGATGATGTGTTGAATGCAACTGGCCAAGTTATGGAGAAGACATGTTATGGGACAGCTTATAAGGCAAAACTTGCTGATGGAGGCACCATTGCTTTGAGGTTATTGAGAGAAGGAAGCTGCAAGGATAAGACTTCATGCTTGTCAGTTATAAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATCCCTTTGAGGGCTTTCTATCAGGGGAAGAGGGGGGAGAAGCTCCTTATTTATGATTATCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAAAGTAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGGCGACACAAGATTGCATTGGGTATAGCAAGAGGGCTAGCTTATCTTCATACAGGACTTGATGTTCCTATCACTCATGCAAATGTAAGGTCCAAGAATGTGCTTGTGGATGACTTCTTTGTAGCAAGGCTCACTGATTTTGGCCTTGATAAGCTGATGATTCCTTCCATCGCCGACGAAATGGTGGCGCTTGCCAAGACCGATGGCTACAAGGCTCCTGAGCTTCAAAAAATGAAGAAATGTAACTCCAGGACTGATGTCTTTGCATTTGGCATATTACTGCTTGAAATCTTGATTGGCAAGAAACCTGGGAAAAATGGAAGGAATGGTGAGTTTGTGGATTTGCCTTCAATGGTGAAGGTAGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTCTTGAAAGGGATAAGAAGTCCAATGGAAGATGGGCTGGTCCAAGCACTGAAGCTGGCAATGGGATGCTGTGCACCAGTGGCATCTGTTAGACCAACCATGGATGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCTACAGAAACAAGGAGTGGAAGTATTACACCATTTTGA 2016 0.436 MLFFFFFFCFCTASTPTKSLSPSTSSDVELLLGKIRASLQGNSDNLVLSSWNSSIPLCQWRGLKWVFSNGSSLSCSDLSSPLWTSLSLYKDPSVHLLSLQLPSANLSGSLPRELGEFPMLQSLYLNINSLKGAIPLELGFSSSLSDIDLGDNMLSGALPPSIWNLCERLVSLRLHGNLISGSVSEPALPNSSCKNLQFLDLGNNRFSGNFPEFITTFGGLTQLDLGNNMFTGTIPQSVVGLKLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNNPGLCGPPLTSCTRASTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDDLNDEEEDEENGGSAVGGAGEGKLMLFPGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGSCKDKTSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHESKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRSKNVLVDDFFVARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQKMKKCNSRTDVFAFGILLLEILIGKKPGKNGRNGEFVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPTMDEVVRQLEENRPRNRSALYSPTETRSGSITPF. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01984 671 FunFam Leucine-rich repeat receptor-like protein kinase 193 285 - -
Seca2g01984 671 Gene3D Phosphorylase Kinase; domain 1 360 447 - -
Seca2g01984 671 MobiDBLite consensus disorder prediction 652 671 - -
Seca2g01984 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 650 IPR046959 -
Seca2g01984 671 SUPERFAMILY L domain-like 60 260 - -
Seca2g01984 671 ProSiteProfiles Protein kinase domain profile. 371 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01984 671 Gene3D Ribonuclease Inhibitor 169 286 IPR032675 -
Seca2g01984 671 Gene3D Transferase(Phosphotransferase) domain 1 449 663 - -
Seca2g01984 671 Gene3D Ribonuclease Inhibitor 29 168 IPR032675 -
Seca2g01984 671 Pfam Protein tyrosine and serine/threonine kinase 375 646 IPR001245 GO:0004672|GO:0006468
Seca2g01984 671 Pfam Leucine rich repeat 195 253 IPR001611 GO:0005515
Seca2g01984 671 MobiDBLite consensus disorder prediction 651 671 - -
Seca2g01984 671 MobiDBLite consensus disorder prediction 323 352 - -
Seca2g01984 671 SUPERFAMILY Protein kinase-like (PK-like) 380 647 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01984 Seca-Chr2 42720175 42723493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01984 1 671 Receptor kinase-like Gene Family AT3G24660 73.363 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca2g01984 PK_Tyr_Ser-Thr 5.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01984 - - gmx:100814814 1134.4