Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01980 ATGGCTGAGTTTTTTAGGCACTTGCTAGTGTCAATGCCGAGGCATTCCTTGAGCAACCACAACCACCACCAAATGCCGAGGCAAGCTTTCATCACAAACCATCACCATCACCACCATCACCACCATCACCATCACCTTCACCATCTTCATTTTGTTTTCCATGTTTTCTTCTTTACACTTCTTGTCCCTCTTTCCTTTGCTGCTAATGATGAAGTTAGTGTCTTAGTTTCATGGATGCATAGCTCTTCCAAAGTTCATTCAGCGTTTTCTAACTGGAACCCTTTGGACTCTAGTCCTTGCAATTGGTCTTACATCAAATGCTCTTCAGAAAGTCTTGTCACTGAGATAAACATTCAAACAGTTGAGTTAGCCCTTCCTTTTCCTTCCAATATCTCTTCCCTTCCCTTCCTTCAAAAGCTGGTCATTTCTGGGGCTAACCTTACTGGGGCTATCTCACCTGATATAGGGAATTGCCCTGAGCTTACAGTTATTGATCTTAGCTCAAATGGTCTTGTGGGTGACATTCCTTCAAGTATTGGTAAGCTCAAAAATCTCCAAGATTTGAGCTTGAACTCTAACCAGCTTACTGGGCCAATCCCAAAGGAGCTTGGTGATTGTTTTAATCTTAAGAATCTTGACATTTTTGACAACAACCTTAGTGGGGATCTTCCTGCTGAGCTGGGAAAGCTTTCAAATCTGGAAGTTATAAGAGCAGGAGGAAACAAGGACATTGTGGGGAAGATTCCAGATGAGCTTGGAGAATGCAGGAATTTGACAGTGTTAGGTCTTGCTGACACTAAAATTTCTGGTTCAATGCCTGCTTCATTGGGTAAGCTAAGTATGCTTCAGACAATATCTATTTATAGTACATTACTCTCTGGTGAGATTCCTCCTGAAATAGGCAACTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTCACTGGTTCACTGCCAAAGGAGCTAGGTAAGCTTCAGAAGCTGGAAAGAATGCTGTTGTGGCAAAATAGTCTTGTTGGAAGCATACCTGAGGAAATTGGCAACTGCAGAAGCTTGAAGATTCTTGATGTCTCCTTAAATTTATTATCTGGTGGAATACCTCAAAGTTTGGGGCAACTCTCAAATCTTGAAGAGCTTATGCTAAGTAACAATAACATCTCTGGTTCAATACCACCTGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTAGATACAAATCAGCTATCAGGTTCTATTCCACCTGAGCTTGGAAGGTTGACAAAGCTAACAGTTTTTTTTGCTTGGCAGAACAAGCTTGAAGGTGGCATTCCATCAGCATTGGGAGATTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCACCAGGCCTATTTAAGCTTCAAAACTTGACAAAGCTTTTACTCATCTCTAATGATATTTCAGGCCCCATTCCCCATGAGATTGGTAACTGCAGTTCTCTCATTAGGCTCAGGCTTGTAGATAACAGAATCAATGGGGAGATACCAAAAGAAATTGGCTTCCTCAACAACCTCAGTTTCCTTGATCTGTCTGAAAATCATCTTACTGGGTCAGTACCACAAGAGATTGGAAACTGTAAAGAGCTTCAAATGCTGAATCTAAGCAATAACTCCCTTTCTGGTGCTTTGCCTAATCATTTGTCTTCTCTTACAAGGCTAGAGGTTTTGGATGTTTCTCTGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATTCTAAGCAAAAACTCTTTCTCTGGATCAATTCCCTCTTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACATGTTCTCAGGGAGCATCCCATCAGAACTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCATAATGCATTATCTGGTGTAATCCCACCAGAGATTTCATCTTTGAACAAGCTTTCTGTTCTAGACCTTTCACACAACATGCTTGAAGGTGACTTGATGGTGTTTTCAGGGCTTGAAAATCTTGTTTCTCTGAATATTTCCTACAACAAATTCACTGGTTATCTTCCAGACAGCAAGCTATTCCACCAACTATCAGCAACAGACTTTGCTGGAAATCAAGGTCTGTGTCCTAATGGCCATGATTCATGTTTTGTTAGCAATGATGCAATGGAAAAAATGCTGAATGGCACTAATTCTAAGAGGTCAAAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGACTGTGGCAATGGCAATCTTTGGAGTTGTTACAGTGTTGAGAGCAAGGAAAATGATTAGAGATGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTGAATTTCTCTGTGGAGCAAGTTTTGAAATGCTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATTGTGTATCGTGCAGATATGGAAAATGGTGATGTTATTGCTGTGAAAAGACTATGGCCAACAACAATGGCTGCTAGATATGATACTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGGAACACAAGACTGCTTATGTATGATTACATGCCAAATGGGAGCCTAGGAAGTCTACTTCATGAAAGAAGTGGAAATTGCTTGGAATGGGACATCAGATTTCGGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCCTCCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGACTTTGGCCTTGCAAAACTTGTTGATGATGGAGATTTTGCAAGATCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCTGAGTATGGGTATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTATTGGAAATACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTTCATATTGTTGATTGGGTGAGACAGAAAAGAGGGGGAGCTGAAGTGCTAGATGAAAGCTTAAGAGCTAGGCCAGAATCTGAAATTGAGGAGATATTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTAAACTCAAGTCCAGATGATAGACCAACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGGATCTTCTGCAAATGATCAACAAGAAAGTAATCATTCCAATGAAGAACCAATGGCAATGATGAAACATGCATGCCCAACAAGCAGCAGCAGTAGCAGCAACACAAATCTGCATCTAAATTACTCTCCTCATTGTAGTCCAACACTAAAGTAA 3507 0.41 MAEFFRHLLVSMPRHSLSNHNHHQMPRQAFITNHHHHHHHHHHHHLHHLHFVFHVFFFTLLVPLSFAANDEVSVLVSWMHSSSKVHSAFSNWNPLDSSPCNWSYIKCSSESLVTEINIQTVELALPFPSNISSLPFLQKLVISGANLTGAISPDIGNCPELTVIDLSSNGLVGDIPSSIGKLKNLQDLSLNSNQLTGPIPKELGDCFNLKNLDIFDNNLSGDLPAELGKLSNLEVIRAGGNKDIVGKIPDELGECRNLTVLGLADTKISGSMPASLGKLSMLQTISIYSTLLSGEIPPEIGNCSELVNLFLYENDLTGSLPKELGKLQKLERMLLWQNSLVGSIPEEIGNCRSLKILDVSLNLLSGGIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPELGRLTKLTVFFAWQNKLEGGIPSALGDCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPHEIGNCSSLIRLRLVDNRINGEIPKEIGFLNNLSFLDLSENHLTGSVPQEIGNCKELQMLNLSNNSLSGALPNHLSSLTRLEVLDVSLNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSSLGQCSGLQLLDLSSNMFSGSIPSELFQIEALDIALNLSHNALSGVIPPEISSLNKLSVLDLSHNMLEGDLMVFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATDFAGNQGLCPNGHDSCFVSNDAMEKMLNGTNSKRSKIIKLAIGLLSALTVAMAIFGVVTVLRARKMIRDDNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRADMENGDVIAVKRLWPTTMAARYDTQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEILTGKQPIDPTIPDGLHIVDWVRQKRGGAEVLDESLRARPESEIEEILQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDGSSANDQQESNHSNEEPMAMMKHACPTSSSSSSNTNLHLNYSPHCSPTLK. 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01980 1168 SMART LRR_typ_2 519 543 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 616 639 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 447 471 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 399 423 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 375 398 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 687 712 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 327 351 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 182 206 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 664 686 IPR003591 -
Seca2g01980 1168 SMART LRR_typ_2 591 615 IPR003591 -
Seca2g01980 1168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672|GO:0006468
Seca2g01980 1168 SUPERFAMILY L domain-like 440 747 - -
Seca2g01980 1168 MobiDBLite consensus disorder prediction 1141 1168 - -
Seca2g01980 1168 MobiDBLite consensus disorder prediction 1142 1168 - -
Seca2g01980 1168 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 449 736 - -
Seca2g01980 1168 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 908 1118 - -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 271 367 IPR032675 -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 183 270 IPR032675 -
Seca2g01980 1168 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 68 224 - -
Seca2g01980 1168 Pfam Leucine rich repeat 159 219 IPR001611 GO:0005515
Seca2g01980 1168 Pfam Leucine rich repeat 352 412 IPR001611 GO:0005515
Seca2g01980 1168 SUPERFAMILY RNI-like 140 514 - -
Seca2g01980 1168 ProSitePatterns Protein kinases ATP-binding region signature. 823 845 IPR017441 GO:0005524
Seca2g01980 1168 Pfam Leucine rich repeat N-terminal domain 68 108 IPR013210 -
Seca2g01980 1168 ProSiteProfiles Leucine-rich repeat profile. 377 400 IPR001611 GO:0005515
Seca2g01980 1168 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 800 907 - -
Seca2g01980 1168 Gene3D Phosphorylase Kinase; domain 1 801 907 - -
Seca2g01980 1168 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 338 1099 - -
Seca2g01980 1168 ProSiteProfiles Protein kinase domain profile. 817 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 70 182 IPR032675 -
Seca2g01980 1168 Gene3D Transferase(Phosphotransferase) domain 1 908 1123 - -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 561 644 IPR032675 -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 645 732 IPR032675 -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 464 560 IPR032675 -
Seca2g01980 1168 Gene3D Ribonuclease Inhibitor 368 463 IPR032675 -
Seca2g01980 1168 SUPERFAMILY Protein kinase-like (PK-like) 800 1100 IPR011009 -
Seca2g01980 1168 Pfam Leucine Rich Repeat 546 567 IPR001611 GO:0005515
Seca2g01980 1168 FunFam Predicted protein 225 322 - -
Seca2g01980 1168 Pfam Protein tyrosine and serine/threonine kinase 820 1098 IPR001245 GO:0004672|GO:0006468
Seca2g01980 1168 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 323 431 - -
Seca2g01980 1168 SMART serkin_6 817 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01980 1168 SMART LRR_sd22_2 423 455 - -
Seca2g01980 1168 SMART LRR_sd22_2 664 689 - -
Seca2g01980 1168 SMART LRR_sd22_2 375 401 - -
Seca2g01980 1168 SMART LRR_sd22_2 182 203 - -
Seca2g01980 1168 PRINTS Leucine-rich repeat signature 664 677 - -
Seca2g01980 1168 PRINTS Leucine-rich repeat signature 522 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01980 Seca-Chr2 42637819 42642022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01980 66 1127 Receptor kinase-like Gene Family AT5G56040 47.026 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g01980 PK_Tyr_Ser-Thr 5.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01980 - - gmx:100794698 1950.64