Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01976 ATGGAGTGTGAAGTGGAATTGCAAGGAGGAGATCTGCATGCAGGGGTGGTAACTGAGACAGACCCAGTTGGTTTTGGCACCATGGAAGATGCAGATACTTTGGCAGTTGCTGATAGAGAGATGTGGCTTAACACTGACCAAGATGATCTCTTGGGTGTAAATGATGCTTCCATGTTCTATGCTGATTTCCCTCCTCTACCTGATTTCCCATGCATGTCATCATCTTCTTCTTCATCTTCAACACCAGCATCACTCCCATTGAAAACCATAGCATGTTCCACCACCACAACCACAACAACCACCTCTTCCTCCTCTGCTTCATCCTCCTCTGCTGCTTCTTGGGCTGTTCTGAGGTCAGATGTTGAGGAAGATGCAGAGAAAAACAGGAACATTAATGGTTACAACATGCAGCATCAAGATCCACTAGATCATGCAACAACACCTGCTGCTTTGTCCTCTACTGCATCCATGGAGATCCCACAACACCCTGATCAAACTGGTCTCAATGGTGGTATTGTTGGTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTTTAGAAGCCAATGATTTCTTTGACCCTGCTGCTATTTTTCAGAATGAAGAAAACCCCTTAGTGGAGTTCACACAGGAGGATGAGCACCACCAGCATGTCCCAGAAGAAGAACATCATCAGCAGCATCAACATGCAGTGTTTGTGCATAACAGAGAATCAACTACACCACAACAAGGGCCAGAGGAAGATAATCAGATTCTCTTGTGTGACAATACCAATAACAACGAGGAAGAGATCCAAAGAGAAGAAGGTGTATATGGTGTTGCAGATGATGAAATGAGCACAGTGTTCTTGGAGTGGCTAAAGTCTAACAAAGATAGTGTCTCTGCTAATGATTTGAGGAATGTGAAGCTTAAAAAAGCCACAATAGAAAGTGCTGCAAGGAGATTAGGTGGAGGAAAAGAAGGCATGAAGCAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAGAATAAACGGCGCAAGGAGAATAACAGTAACAGCAACAATAACACCAATCCGCCAAATCTCTTGCCGCAATTTCTGGATCCTTGTCAGAACCAAAACACAAACAATGGTTCTAATCTGAACCCAAGTTCATTTGGACCTGAATCAAACACTTGTTTCAACCAAACACCCTGGCTCTCACCACCACAGCCACAACCACCACATTTTGGGGCAGATCAAGCACCACTCATGGTACCTCATCAACAGCAATTTTCACAACCTATGGTTGGGTATGTGGGTGACCCTTACACAAATGGTACTACTTCAAACAACATGAATAGTACTCATAACCATAACCCTTACCAGCCTGCTACTGAATACCACATGCTGGAATCAACTCACTCATGGCCTCCACCTTCTCAATTCACTGTTGCTTCTCACTATAATCAGTCCTTTGGAGACAGTAATCTCCCTCCGGTGGCGGTGGCGGCGGCTTTCGGCGGCGGAGGCTATGGCAATCAGTATCCTTATCAGTTTTTCCATGGCCCTGGTGATAGGTTAATGAGATTAGGCCCTTCAGCTACTAAAGAAGCAAGGAAGAAGAGAATGGCGAGACAGAGAAGGTTCTTGACTCATCACAGGCATCATAATAGTCACCATCAAAATCAAGCTTCTGAAAGATTGGGAGGGGATAATTGCACCAATGTTGTTGCTGCTTCTCATGCAAATCCACCGAATTGGATGTACTGGCAGACTATGGCTGCCAGTGGTGCTCCTCCCTTGGCACCAGTGGTTCCGGCTGAGCCTTTGCCGGTGGAGCGGCCGGCCATGCAGACACAGAATTGTCATCAGAGTAGAGTTGCATCAGATAGGAGACAGGGTTGGAAGCCAGAGAAGAATTTGAGGTTCCTTCTCCAAAAGGTGTTAAAGCAAAGTGATGTTGGAAGTTTGGGGAGGATTGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAACTGGAGGCAAGGGATGGAATTACCATTACAATGGAAGACATTGGAACTTCTAGAGTTTGGAATATGCGCTACAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAACACTGGGGACTTTGTGAGAGCCAATGGACTCCAAGAAGGAGATTTCATAGTGATATATTCAGATGTTAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAAGGGGCGAAGCCAGACACAAAGAAAGGAGGAAAATCTCAGAAAAACCAGCATGGGAATAATGCTGCAGCTACTACAGCTGGTGCCGTTGCAACTAATAATGGCACATCATCTTCACAGAAGCAAAAATCTGAAAAGGTAGTAAATTAA 2376 0.4465 MECEVELQGGDLHAGVVTETDPVGFGTMEDADTLAVADREMWLNTDQDDLLGVNDASMFYADFPPLPDFPCMSSSSSSSSTPASLPLKTIACSTTTTTTTTSSSSASSSSAASWAVLRSDVEEDAEKNRNINGYNMQHQDPLDHATTPAALSSTASMEIPQHPDQTGLNGGIVGDCMDDVMDTFGYMELLEANDFFDPAAIFQNEENPLVEFTQEDEHHQHVPEEEHHQQHQHAVFVHNRESTTPQQGPEEDNQILLCDNTNNNEEEIQREEGVYGVADDEMSTVFLEWLKSNKDSVSANDLRNVKLKKATIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRRKENNSNSNNNTNPPNLLPQFLDPCQNQNTNNGSNLNPSSFGPESNTCFNQTPWLSPPQPQPPHFGADQAPLMVPHQQQFSQPMVGYVGDPYTNGTTSNNMNSTHNHNPYQPATEYHMLESTHSWPPPSQFTVASHYNQSFGDSNLPPVAVAAAFGGGGYGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLTHHRHHNSHHQNQASERLGGDNCTNVVAASHANPPNWMYWQTMAASGAPPLAPVVPAEPLPVERPAMQTQNCHQSRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQGAKPDTKKGGKSQKNQHGNNAAATTAGAVATNNGTSSSQKQKSEKVVN. 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01976 791 ProSiteProfiles B3 DNA-binding domain profile. 640 742 IPR003340 GO:0003677
Seca2g01976 791 MobiDBLite consensus disorder prediction 349 385 - -
Seca2g01976 791 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 289 772 IPR044800 GO:0003700
Seca2g01976 791 SMART B3_2 640 740 IPR003340 GO:0003677
Seca2g01976 791 MobiDBLite consensus disorder prediction 743 791 - -
Seca2g01976 791 MobiDBLite consensus disorder prediction 343 385 - -
Seca2g01976 791 Pfam B3 DNA binding domain 641 737 IPR003340 GO:0003677
Seca2g01976 791 MobiDBLite consensus disorder prediction 756 791 - -
Seca2g01976 791 FunFam B3 domain-containing transcription factor FUS3 636 751 - -
Seca2g01976 791 Gene3D - 631 748 IPR015300 -
Seca2g01976 791 SUPERFAMILY DNA-binding pseudobarrel domain 639 735 IPR015300 -
Seca2g01976 791 CDD BfiI_C_EcoRII_N_B3 638 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01976 Seca-Chr2 42611090 42614366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01976 30 775 B3 DNA Binding Superfamily AT3G24650 46.338 2.29e-166 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g01976 B3 1.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01976 K09287 - gmx:100795226 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01976 2 42611090 42614366 Seca2g01976 2 42611090 42614366 ECH