Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01961 ATGGCAACGGCAACATACCCCCCACCGCCACCTTATTACAGACTTTACAAAGATTACTTGCAAGACCCTAAGTCTGCTCCGGAGCCTCCACCACCTATTGAAGGGACTTACATTTGTTTTGGAGGCAATTACACTGTGAGGACTTTTACCCTTGTGCTTTTGATATCATGGAAGTTGTGTTTAAGACTAGTGACGTGCTGCCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGGCCTAATGTTGATATTTCGAGCCCATGAGACATGTGCTGGGGTTTGGGAGCAGGCAAGGGTGCTTTACACCAATGATACTCAACGCCTCTATGGTGTTTGCCACAATCTCTTGAGTACCATTGTCCCTAGACGTCTTGATGGATCCATGGCTGAGTACTTGGGCAAAGTTCATGGTCTTTTACATGACTTCAATGAACTCTTGCCCCCCGCTTCCACTCCTGCCCAAGAACTGGAGCAACGCCAAACTTTCTTTATGTTGATGGCATTGTATGGGCTCCCTGACGAGTATTCTTTGGTCCGTGATCAGATTTTGGGCTCTCCGACTGTGCCCACTTTGACCTCTACTTGGTCAACGTTGTTGCGTGTGCCGCCCAAGTCATCTCTTGACATACCTTCTACTGTCACCCCGGTTGACTCTTCTGCCTTAGTATCCCAGCGTGATGATCGCAGCCGCTCTCGCAAACCAGGCAAGGGTCGTCCCAAGTGTGATCATTGCCACAAATTGGGCCACACTATTGATAGGTGCTTTGCATTGCATGATTTCAAGAAGGAGCTGAGGTCACTTAATGGAGAATTACAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCGAGGAGAGTTGAAGAAATTTCAACTGTATTCAAAAACTTACATCACCTTTTAAATTCACTGCGTCCTCATCAGGCAAGAGCAACATTGATTCACATTTTGGAACTTCAAATACAGCGCCGTAAACAAGCTGTAGAGGACATAAAGAGGAGGAGAGAAGAAGCTCGAAGACTCCTTAACGAGTCCCTGGCAACACTTGATGGCCAATAG 1086 0.4678 MATATYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYICFGGNYTVRTFTLVLLISWKLCLRLVTCCQAWKNKGCASSILRGLMLIFRAHETCAGVWEQARVLYTNDTQRLYGVCHNLLSTIVPRRLDGSMAEYLGKVHGLLHDFNELLPPASTPAQELEQRQTFFMLMALYGLPDEYSLVRDQILGSPTVPTLTSTWSTLLRVPPKSSLDIPSTVTPVDSSALVSQRDDRSRSRKPGKGRPKCDHCHKLGHTIDRCFALHDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATLDGQ. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01961 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 46 IPR009244 GO:0003712|GO:0006357|GO:0016592
Seca2g01961 361 SUPERFAMILY Mediator hinge subcomplex-like 262 352 IPR037212 GO:0016592
Seca2g01961 361 Coils Coil 323 357 - -
Seca2g01961 361 MobiDBLite consensus disorder prediction 219 243 - -
Seca2g01961 361 Gene3D - 254 352 IPR044888 -
Seca2g01961 361 Pfam MED7 protein 261 351 IPR009244 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01961 Seca-Chr2 41669347 41677217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Seca2g01961 Med7 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01961 K15148 - ccaj:109793947 317.005