Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01947 ATGACATCCTTGCCAGTTGATGTCGAAGACACTCATATGCCACAATCATCTCCTTACTCTTCTTTGACACCAGATTTTGGTTTGATCAATAATGATGAACTTGGGATTCATGGCACGGAGGACGTTCCTATGCCACAATCATCTGAGATAAATAAATGGGTTCCAAATTGTGATGAAGAAGTAAAGCCTAAGTTAGGGCAGATATTTGATACATTAGAAGATGGTGAAGAGTTTTACAAAAGATATGCACACAGTGTTGGATTTAGCGTGCGTTGCTCATCAGAAAGTAAAAACAAAGATGGAGTAAAGCGGTGGAAGTATTTTGTTTGCTCAAAAGAATGTTACAAACCAAATAAAGCAGAAAATGTGGAACAAAGCAAATCAACAGCTAAGGCTAGAAGAAGGAGTCTTACAAGAGAAGGATGTAATGCAAAGGTTGCTTTCAAATTGTTAGAGGGAGGTAAATATGAGCTTGCTCGATTTCATGAGAGTCATACACGTGCACTTGCCACACCTAGGAAAAGACAATTTCTTAGATCAGTAAGAAAAGTGAATCCTGTTCATAGGAGTTTACTATATGCATATAATAGAGCAAACATTGGGCCTTCAAAGACATATCAGTTATTGAAAGAACAAGTTGGAGGTTATGAAAATGTAGGATGCACACAAAGGGATCTCCAAAATTGTTTGAGATATTTGAAAACCTTGATTAAAGATTCAGATGCATATGTATTTGTTGAAAACTTTAAGAGAAAGCAAGAAGTGAATCCATCATTTTATTATGCATATGAGGTAGATGAAGAAGATAGACTAAAATATGTGTTTTGGGCAGATGGTATTTGTAGAAAAAATTACTCTTTATTTGGGGATGTGGTTTCGTTTGACACTACATATGGGACAAATAAATATTCAATGATTTTTGCACCATTTACTGGAGTAAACCATCATAGACAAAGTATTACTTTTGGAGTAGCCTTCTTAGCTGATGAAAAAATTGAGTCATTCATTTGGTTGTTTGATAAATTTTTGGAAGCAATGAGAGGACATAAACCAATTCTTATAATAACAGATCAGGATCCTACCATGAAAATTGCAATAGAAAAGATCCCAGCTTACTTTAAAAACATATTTTTGGGTGGAATATTGAGAACAACCTCAAGGTCAGAAAGTGAAAATTCCTTTTATGGAAATTTTTTGAATCCTAATGTTAGTTTGGTTGAATTTTGGATGAGGTTTGATTCTGCTATAGAAGCACAAAGGCATAAGGAGTTGCTTGCTGATAATGATTCACTTCATTCCCAACCGGTGTTGAAGTTGGATCGTGGTTTAGAGAAACATGGAAGAGATATTTATACTCGTGAGAACTTTTACATATTTCAAAAAGAGTTGTGGATTGCATGTGTAGACTGTGGAGTTGAAAGTAAGATAGAAAAAGATGGAATGGAAATAATACATATAGATGATAATAGTGAATCCAATGGAAAAGTACGAGAAGTGGTTTATAATGCTTTTAATCATAGTGCAGATTGCTCATGCAAAATGTTTCAATCTCAAGGCATACCATGTAGACATATACTTTGTGTTTTGAAGGGGAAAGGTTTGAATGAAATACCAAGTAATTATATTGTGCATAGGTGGACCAAGTTGGCAACTAGCAAGCCTATTTTTTATGTTGATGGGGAAGTCTTGGAAGGGTGTTCTGAAATAAAAAATGAGAGTCAACTCATAGCAGATGCATGGAATCATTTATTTACATGTATGCATAAGGCTGGACAATGCAAGGAAAAATTGCTTTTGCTAATAAATGGAGTTGTTAACATTGAAAAGCAATTGACTGAATTTAAGGATGATTCTACACAGACCAAGGAAAAAGAATTAGAGACTTTCATTGGATGCAATCTTACTGACGAAGTGGAAATTCATCCACCACATTTTGCAAAGACAAAAGGAAGTGGTAAACGAATCAAAGGAAGAAAGGAGAAGGCTGTTGAACAGCAACAGAAAAGAACTATACTTTGCAGAACATGTGGCCAACATGCATATCATGATAGTCGTAATTGCCCCCAAAAATCATCTCCCTAA 2082 0.3511 MTSLPVDVEDTHMPQSSPYSSLTPDFGLINNDELGIHGTEDVPMPQSSEINKWVPNCDEEVKPKLGQIFDTLEDGEEFYKRYAHSVGFSVRCSSESKNKDGVKRWKYFVCSKECYKPNKAENVEQSKSTAKARRRSLTREGCNAKVAFKLLEGGKYELARFHESHTRALATPRKRQFLRSVRKVNPVHRSLLYAYNRANIGPSKTYQLLKEQVGGYENVGCTQRDLQNCLRYLKTLIKDSDAYVFVENFKRKQEVNPSFYYAYEVDEEDRLKYVFWADGICRKNYSLFGDVVSFDTTYGTNKYSMIFAPFTGVNHHRQSITFGVAFLADEKIESFIWLFDKFLEAMRGHKPILIITDQDPTMKIAIEKIPAYFKNIFLGGILRTTSRSESENSFYGNFLNPNVSLVEFWMRFDSAIEAQRHKELLADNDSLHSQPVLKLDRGLEKHGRDIYTRENFYIFQKELWIACVDCGVESKIEKDGMEIIHIDDNSESNGKVREVVYNAFNHSADCSCKMFQSQGIPCRHILCVLKGKGLNEIPSNYIVHRWTKLATSKPIFYVDGEVLEGCSEIKNESQLIADAWNHLFTCMHKAGQCKEKLLLLINGVVNIEKQLTEFKDDSTQTKEKELETFIGCNLTDEVEIHPPHFAKTKGSGKRIKGRKEKAVEQQQKRTILCRTCGQHAYHDSRNCPQKSSP. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01947 693 Pfam FAR1 DNA-binding domain 77 169 IPR004330 -
Seca2g01947 693 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g01947 693 Pfam SWIM zinc finger 508 528 IPR007527 GO:0008270
Seca2g01947 693 SMART 26again6 508 535 IPR006564 GO:0008270
Seca2g01947 693 Coils Coil 120 140 - -
Seca2g01947 693 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 368 IPR031052 GO:0006355
Seca2g01947 693 ProSiteProfiles Zinc finger SWIM-type profile. 497 533 IPR007527 GO:0008270
Seca2g01947 693 Pfam MULE transposase domain 291 368 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01947 Seca-Chr2 41352161 41354716 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g01947 FAR1 1.8e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01947 - - mtr:112422154 760.37