Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01945 ATGTCTCCAGCAGGTTCATCAAGATGGAGCCCTACAACTGAGCAGCTCATGATCTTGGAGGAACTTTACAGGAGTGGAATTAGAACTCCTAGTGCTTCTCAAATTCAGCAAATAACAACCCACCTTTCTTTCTATGGAAGGATAGAAGGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGACAGGCAAAAGCTCAGGAGGAAACTTAACAAGCAACTGCAGCTACAGCAACAACTCCAAGTTCATCATCATTGCCAACTCAATCAGGATATCAATAACCATTTTGTTGGTAGCTTTGGTTATCCTCCTGGATCTAGTACAAAAGAAATTTCCTTTTTTAACTCAGCTAGCTTGCTTTTTCAGGGAGGAGATGCAAACACATCAGAAGGTGCAATCAATTGCAAATGGAATGCTTATAATCCACAAAGTTTGATGGAGAAGAAAGAGATTGCATTCTGCAACTATGGTTGGAGTACACTTATGGATGTTAATCAAGCTTCTTCATGTTGCACTAGACCTCTCAAGACTCTTGATCTCTTTCCAATCACAACTACCAGAATCAAAGAAGACTGCACCACATCACCTAACAGTACCCCTATCTTTCCATGTTCTTCAACTAAAACCCAAAACTACTACTCTAAGTGA 654 0.4021 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQLQVHHHCQLNQDINNHFVGSFGYPPGSSTKEISFFNSASLLFQGGDANTSEGAINCKWNAYNPQSLMEKKEIAFCNYGWSTLMDVNQASSCCTRPLKTLDLFPITTTRIKEDCTTSPNSTPIFPCSSTKTQNYYSK. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01945 217 Gene3D - 3 67 - -
Seca2g01945 217 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Seca2g01945 217 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Seca2g01945 217 FunFam WUSCHEL-related homeobox 4 6 73 - -
Seca2g01945 217 CDD homeodomain 8 67 IPR001356 GO:0003677
Seca2g01945 217 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Seca2g01945 217 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 201 IPR044555 GO:0003700|GO:0099402
Seca2g01945 217 SMART HOX_1 4 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01945 Seca-Chr2 41296348 41297742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01945 6 72 Wox Gene Family AT3G18010 73.134 2.87e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca2g01945 Homeodomain 7.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01945 - - gmx:102663963 288.5