Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01926 ATGAATGCTCATCATTTACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAAAAATTGGAATTTTATTTAACTACAGGAAGACTTCCACCAATTCCAAAGAACAGTTCTCAAGTCGCTGCCAAAGATACAATTAGACGTTCTGCTACTAAACCAATACTTGTTTGTTCAAATAAAGAATTACATGTTTCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGTTAGAGAAGTTGGTGATTCTTCAAGTATTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGACTGGATCATCCAATGTGGATCTAAGCTATGGAAACTCAGAACAAGTATCAAGAGCTAATTTTGGACCAACATATGGGCCAAAATCTGAGAATTCTGGACTTAATGGAAACCCGACAATTGAGCATTGTTTAAACAATGCTAAAATGAGCAGTAGCAGGTTAATCAGAACATCTTTGCATGAGAATCCAACCTGTGGTTCTTTGTATTATAAGCCACCACAGTTAGATGGTTCACTTCCTTTAGATTCTCTTTATTTAAATATTGTTTGCCTGCAGAATGAGTACTGTTCTAATCCAATGTTGTCGCCTATTGGTTTCCTCACTCCACCTTGTGTGAAGGGTAGTGAATTATGCACAGAGACACCTCAATCAATATTGAAGAAGGCTGCAAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGAGTCCAAACACACACTACTCCTAGTAAAGTTTTGAAAGTAGATAATGATTCACATACTTCTATTGAACCAGATAGAACCAAGGATAATTCTGGTTCTGAAGTTAGGACATTCTCTGTGAGTCCAGCAAGCCATGGCACTGGGAATGACATTCCCAATAATAAGGCATTCAATGCATCTCCACCATATCGGTTAAGACCCAAGCGAACAGCCGTTGCAAAGTCCGTGGAGAAACAACTTGAGTTTGCATTTGACAAAGAGAAGAATGATGACAATATCAACACAATGGATAAATCTGCAAAGAGGAGCAATTTGATGACTGAAGAGTGTCTGCATGAAACAAAATTGGTAGTGACATAA 1191 0.382 MNAHHLHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLTTGRLPPIPKNSSQVAAKDTIRRSATKPILVCSNKELHVSVETSSETTAISKLDDSGKNQFESSGTVREVGDSSSIPANESADSDCVECKTGSSNVDLSYGNSEQVSRANFGPTYGPKSENSGLNGNPTIEHCLNNAKMSSSRLIRTSLHENPTCGSLYYKPPQLDGSLPLDSLYLNIVCLQNEYCSNPMLSPIGFLTPPCVKGSELCTETPQSILKKAANTFPNTPSILRRRKTGVQTHTTPSKVLKVDNDSHTSIEPDRTKDNSGSEVRTFSVSPASHGTGNDIPNNKAFNASPPYRLRPKRTAVAKSVEKQLEFAFDKEKNDDNINTMDKSAKRSNLMTEECLHETKLVVT. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01926 396 MobiDBLite consensus disorder prediction 310 333 - -
Seca2g01926 396 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Seca2g01926 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Seca2g01926 396 Gene3D - 1 66 - -
Seca2g01926 396 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Seca2g01926 396 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Seca2g01926 396 CDD SANT 2 34 IPR001005 -
Seca2g01926 396 MobiDBLite consensus disorder prediction 293 309 - -
Seca2g01926 396 MobiDBLite consensus disorder prediction 86 127 - -
Seca2g01926 396 MobiDBLite consensus disorder prediction 273 341 - -
Seca2g01926 396 PANTHER MYB PROTEIN-RELATED 1 131 - -
Seca2g01926 396 MobiDBLite consensus disorder prediction 273 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01926 Seca-Chr2 40884629 40889034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01926 1 369 MYB Transcription Factor Family AT5G02320 38.802 3.36e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g01926 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01926 K09422 - gmx:778081 610.527