Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01923 ATGCTAGAACTCATCACCTACTACCTTCTCAAGAAGGTTCTTGACAACACCTTCACTGGAAGAGCTATAACTGAAGTTGACCTTAACAAGTGTGAGCCTTGGGAGCTTCCTGAAAGAGTGAATTTTCTAACCTTATGGTTGTTGTTGGCGGGGAAAGCTAAGATTGGTGAAAAGGAGTGGTATTTCTTTAGCCTACGTGATAGGAAGTACCCAACTGGGCTACGTACTAATAGAGCCACAGAAGCTGGTCATTGGAAAGCCACTGGGAAAGATAGAGAGATTTATAGCTCAAAATCTTGCTCCCTTGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGTAGAGCTCCTAAAGGGGAAAAATGCAACTGGGTCATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCACTACCTCTCTAGGAACACCAAGGCATGTCCTTCTTTGATAATTAATTCACCCTCTCTTCTTTTTCCTGTTATTATTCATGAATAG 498 0.4197 MLELITYYLLKKVLDNTFTGRAITEVDLNKCEPWELPERVNFLTLWLLLAGKAKIGEKEWYFFSLRDRKYPTGLRTNRATEAGHWKATGKDREIYSSKSCSLVGMKKTLVFYRGRAPKGEKCNWVMHEYRLEGKFAYHYLSRNTKACPSLIINSPSLLFPVIIHE. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01923 165 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 134 - -
Seca2g01923 165 FunFam NAC domain-containing protein 100-like 1 152 - -
Seca2g01923 165 Gene3D NAC domain 2 149 IPR036093 GO:0003677|GO:0006355
Seca2g01923 165 SUPERFAMILY NAC domain 3 141 IPR036093 GO:0003677|GO:0006355
Seca2g01923 165 ProSiteProfiles NAC domain profile. 1 146 IPR003441 GO:0003677|GO:0006355
Seca2g01923 165 Pfam No apical meristem (NAM) protein 3 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01923 Seca-Chr2 40615625 40616180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01923 3 145 NAC Transcription Factor Family AT5G53950 76.224 2.02e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g01923 NAM 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01923 - - zju:107432467 251.521