Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01920 ATGAAGGATAGGCAAAGGTGGAGAGCAGAAGAGGATACTTTACTACATGCTTATGTCAAACAATATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGTATTAAGAAAGGATCTCTCACCGAAGAAGAGCAGCGCCTTGTCATCAACCTTCAAGCAAAACACGGCAACAAATGGAAGAAAATCGCCGCGCAAGTCCCCGGCCGCACTGCTAAGAGGATAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAAAGAGAAGCAAAAGGGATTAATAGAACTGTTGATCCGATTAACAATAGCAAGTACGAGCATATACTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAGCACCCTTCACCATCATTTTTCATGGCAACTTCTAACAATTCTTTTCTGCACACTGATGCACCAGCTCTGCTTCCTTCATGGCTTTCGAATTCGAATAGCACTGCACCTGTTAGGCAACCTTCCCCTTCTGTGACACTAAGTCTTTCTCCCTCAACAGTGGCAGCACCTCCTCCATGGTTGCAACCTGTTCGAGGAGGACCAGAGAATGCTCCTCTTGTCTTGGGGAATGTAACTACTACTCCTCATGGGGGTGTTTTACCTTATGGTAAAAACATGGTGATGTCTGAGTTGGTTGAGTGCTGTAACGAGTTGGAGGAAGTGCATCATGCCTTGGCAGCACATAAGAAGGAGGCGGCATGGCGGTTAAGCCGGGTGGAGTTGCAGTTGGAATCTGAGAAGGCATGTAGAAGGAGGGAGAAAATGGAAGAAATTGAAGCAAAGATAAAAGCTCTAAGGGAGGAGCAGATATCTGCTTTGGATAGAATTGAAGCAGAATACAGGGAACAGTTAGCAGGGTTGAGAAGAGATGCAGAAACCAAAGAGCAGAAGTTAGCTGAGCAATGGGCTGCAAAACACTTGCGCCTTACCAAGTTTCTTGAGCAAGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG 1065 0.4582 MKDRQRWRAEEDTLLHAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQAKHGNKWKKIAAQVPGRTAKRIGKWWEVFKEKQQREAKGINRTVDPINNSKYEHILESFAEKLVKEHPSPSFFMATSNNSFLHTDAPALLPSWLSNSNSTAPVRQPSPSVTLSLSPSTVAAPPPWLQPVRGGPENAPLVLGNVTTTPHGGVLPYGKNMVMSELVECCNELEEVHHALAAHKKEAAWRLSRVELQLESEKACRRREKMEEIEAKIKALREEQISALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRSRLSEPNGR. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01920 354 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
Seca2g01920 354 FunFam MYB-related transcription factor 4 58 - -
Seca2g01920 354 Pfam Myb-like DNA-binding domain 7 68 - -
Seca2g01920 354 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca2g01920 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca2g01920 354 Gene3D - 62 128 - -
Seca2g01920 354 Coils Coil 303 323 - -
Seca2g01920 354 CDD SANT 6 53 IPR001005 -
Seca2g01920 354 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 349 - -
Seca2g01920 354 CDD SANT 63 104 IPR001005 -
Seca2g01920 354 Coils Coil 281 301 - -
Seca2g01920 354 Gene3D - 4 58 - -
Seca2g01920 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Seca2g01920 354 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca2g01920 354 SMART sant 58 106 IPR001005 -
Seca2g01920 354 SMART sant 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01920 Seca-Chr2 40338501 40341613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01920 1 345 MYB Transcription Factor Family AT2G37630 65.312 1.61e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g01920 Myb_DNA-bind_6 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01920 K09422 - gmx:100819082 588.186