Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01907 ATGGTAATAATTAGTCCAAAAACTACTGCACCTGCACCTGCAGGTCCATCACCTAATTCCCCCACTCCTTGCCCTCCCTCCATAAGTACCCCCTCCCCTTCTCACTTTCCATTCACCTCTCAAACCAACACAACCAACCCCTCTCCTCCATTCTCTCTCTCTCTCTCTTCTGCAATGGCTGGAATTGTTCTGTTCTGCATTGTATCATTGTTCTCTCATTTTGCTGCAACAAATGCTAGAATCCCTGGAGTTTACAGCGGTGGCCCCTGGCAGAGTGCTCATGCTACTTTCTATGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACTTGTACAGCCAAGGCTATGGGGTGAACACTGCAGCACTAAGCACAGCACTGTTCAACAATGGCTTGAGCTGTGGTGCATGCTTTGAGATCAAGTGTGACCAAGATCCCCGTTGGTGCAACCCTGGAAGCCCTTCCATTTTAATCACTGCAACCAATTTTTGCCCACCAAACTTTGCTCTTCCCAGTGACAATGGTGGGTGGTGCAACCCACCAAGACCACACTTTGACCTTGCCATGCCAATGTTCCTCAAGATCGCTCAATACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGCCATGCAGAAAGAGCGGAGGGATCAGATTCACAATCAACGGTTTTCGTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGAGATATCGTGCGCGTGAGTGTGAAAGGAAGCAACACAGCATGGATGAGCATGAGCCGTAACTGGGGGCAAAACTGGCAATCCAATGCTGTTTTGGTGGGCCAGGCCCTCTCTTTTAGAGTCACCGGCAGTGACCGTCGTACCTCAACGTCATGGAACGTTGCACCACCTAATTGGCAGTTCGGACAAACCTTCATGGGAAAGAATTTCCGTGTCTAA 951 0.5058 MVIISPKTTAPAPAGPSPNSPTPCPPSISTPSPSHFPFTSQTNTTNPSPPFSLSLSSAMAGIVLFCIVSLFSHFAATNARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPPNWQFGQTFMGKNFRV. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01907 316 FunFam Expansin 79 218 - -
Seca2g01907 316 Gene3D - 76 218 IPR036908 -
Seca2g01907 316 CDD DPBB_EXPA_N 89 217 - -
Seca2g01907 316 SUPERFAMILY PHL pollen allergen 219 310 IPR036749 -
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 89 104 IPR007118 GO:0005576
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 129 147 IPR007118 GO:0005576
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 107 125 IPR007118 GO:0005576
Seca2g01907 316 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Seca2g01907 316 Gene3D - 222 314 IPR036749 -
Seca2g01907 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 311 IPR007117 -
Seca2g01907 316 PANTHER EXPANSIN-A15 72 314 IPR002963 GO:0009664
Seca2g01907 316 Pfam Expansin C-terminal domain 223 300 IPR007117 -
Seca2g01907 316 SUPERFAMILY Barwin-like endoglucanases 89 240 IPR036908 -
Seca2g01907 316 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 120 134 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 161 171 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 147 158 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 297 313 IPR002963 GO:0009664
Seca2g01907 316 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Seca2g01907 316 MobiDBLite consensus disorder prediction 11 32 - -
Seca2g01907 316 MobiDBLite consensus disorder prediction 1 43 - -
Seca2g01907 316 FunFam Expansin 222 314 - -
Seca2g01907 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 108 222 IPR007112 -
Seca2g01907 316 SMART dpbb_1 125 212 IPR007112 -
Seca2g01907 316 Pfam Lytic transglycolase 125 212 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01907 Seca-Chr2 39836504 39839510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01907 62 316 Expansin Gene Family AT2G39700 84.706 2.85e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01907 - - gmx:547955 518.079