Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g01886 | ATGGAGTTTGAATCTGAGGCAACATCCTATGAATTTTACAACGAGTATAGTAGGAGAATTGGGTTTGGTATTTGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTTTGACTTCAAGAAAATTCTCTTGCTTTAAAGAGGGTAAACGGGGCATTGACAAACGAGACCGTTTGACAAAAGACCCTATAGCAGAAACCAGAACAGGTTGTGAAGCACGTATGGTTATTTCACTTGATCGGAAGATTGAGAAATACAAGGTTTATGATTTTGTAGCTCAACATAATCACCCTCTTCAACCGCCATAA | 309 | 0.3722 | MEFESEATSYEFYNEYSRRIGFGICREYGNKSKKDGILTSRKFSCFKEGKRGIDKRDRLTKDPIAETRTGCEARMVISLDRKIEKYKVYDFVAQHNHPLQPP. | 103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g01886 | 102 | Pfam | FAR1 DNA-binding domain | 11 | 101 | IPR004330 | - | |
| Seca2g01886 | 102 | ProSiteProfiles | WRKY domain profile. | 26 | 100 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Seca2g01886 | 102 | PANTHER | FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED | 1 | 99 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g01886 | Seca-Chr2 | 39288228 | 39288536 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | FAR1 | Seca2g01886 | FAR1 | 9.2e-24 | CL0274 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g01886 | - | - | tpra:123896263 | 170.244 |