Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01885 ATGATTATGGATCCACGTCTTGGTGGGTTTAGTGGTTCCACAAATGAAATCCGGTTGGAGAATCAATCCTTGCCAATTCTGCAGAATCAGAGATTTGAAAATGGTTTCTTTGATCAAAATAGGGAATTTGGTTACCGTCAGTCAAATCCAAAACCAACTGATACACCTTCTTCATCCTCAATTTTGACACATGAGGAAGCTTCTCTAGAGGACTGTGAATTTTCTGATTCAGTTTTGAGTTACATCAGTCAGATCCTTATGGAAGAAGACATGGAAGATAAGACATGCATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCATTCTATGAAGTAATAGGTGAAAAGTACCCAGCTTCACCATTAGGAAATCCAAGTCTTGTTAATCAGAATGATGGTGGTGGAGATAATAACTTCTTTGAAAACTATGGTACCTACCATGATGATAGTGGTGATCTCAGTAGCATTTTTAACCACAATTCTTTACTTCGAAACTTGGGGGATGCTCCTAACCAAAATTTTCAAGGCAATAGCATCTCACAGTCATCTTATAGCTCTTCAAATAGTGTAATAAGTAGTGTGGAAGGGCCTGTGGACTCTCCAAACAGCATTCTCCAGGTCCCTGATCAAAACAGTGAGAATCAATCCATTTTGCAATTTCAAAAGGGTGTTGAGGAGGCTAGTAAGTTCCTTCCAAGTGGGAATGGAATCTTTGCTAATTTGGGTGTGGCTAACTTTTCAACATTTGAGCCTAAATTGGGGAATAATGAATTATCAGTTAAGGTGGAGAAGGATGAGGGGGAGTCTTTTCTTGTTGGATCCAAGGGAAGGAAGCTTTCCCACAGGGAAGAGGGAGATGTTGAAGAACATAGAAAGAGCAAACAACCTGCAATTTACTCAGAACCTACATTAAGGTCAAATATGGTTGACATAATCCTGCTTCATAGTTTGGGAGATGGTAAGAAGCATTTTACAGCTCGTCGCGAGGCTTTGCAAAATAAGAACAATATGATCATGCTACCAAATGCTAAATCAAAAGCTTCCAATAGTGGTAAGGGGAGAGGTAAGAAACAAAATGGGAAAAAGGAAGTGGTTGATTTAAGAACACTTCTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTGTAAAAGTGCACAAGAGTTCCTAAAGCAGATCAGACAGCATTCAAGCCCTTTTGGAGATGGAAATCAGAGGTTGGCTCATATCTTTGCTGATGGCCTTGAGGCACGTTTGGCTGGTACAGGAAGCCAAATTTACAAAGGACTAATAAATAAAAGAACTTCAGCTGCTGATTTTCTGAAAGCTTATTATCTATACCTTGCTGCTTGCCCTTTTAGGAAGATCACTAGTTTTATCTCGAACATCACAATAAGGACATCTTCAGCAAGTTCAATGAGGCTCCATGTAATAGACTTTGGCATCCTCTATGGTTTCCAATGGCCCACTTTCATACAAAGACTTGCATTAAGATCTGGAGGACCACCTAAACTCAGGATCACAGGAATAGACTTTCCACAACCTGGTTTTAGGCCTGCTGAGAGAATTATAGAAACTGGATCCCGCTTAGCAGCATATGCTGAATCTTTTAATGTGCCATTTGAGTACAATGCCATAGCTAAAAAATGGGAAACAATTCAACTTGAGGAACTCAAGATTGATAAGGATGAGTACCTTATTGTTACCTGTTTTTATCGCGGTAAAAACTTGCTAGATGAATCTGTGGTAGTGGACAGTCCAAGGAATAAGTTCCTCAATTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTATGAATGGAGCATTCAATGCCCCTTTCTTTGTTACTCGATTCAGGGAAGCATTGTTTCACTTCTCTTCACTTTTTGATATGCTTGAAACTATTGTTCCCCGTGAGGACTGGGAGAGGATGCTAATTGAAAAGGAGGTGTTTGGGAGGGAAGCATTGAATGTTATAGCATGTGAAGGTTGTGAGAGAGTAGAGAGGCCAGAGACATATAGGCAGTGGCAAGTTCGAATTCTAAGAGCTGGTTTTTTGCAACAACCTTTTGATCGTGGAATAGTAGAGAGGGCAATAGAGAAAGTAAGGTGTACCTACCACAAGGATTTTGTAATTGATGAAGATGGCCAGTGGTTGTTGCAAGGTTGGAAAGGGAGAATTGTTTATGCCCTTTCTTGTTGGAAACCTGCATGA 2229 0.4002 MIMDPRLGGFSGSTNEIRLENQSLPILQNQRFENGFFDQNREFGYRQSNPKPTDTPSSSSILTHEEASLEDCEFSDSVLSYISQILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPASPLGNPSLVNQNDGGGDNNFFENYGTYHDDSGDLSSIFNHNSLLRNLGDAPNQNFQGNSISQSSYSSSNSVISSVEGPVDSPNSILQVPDQNSENQSILQFQKGVEEASKFLPSGNGIFANLGVANFSTFEPKLGNNELSVKVEKDEGESFLVGSKGRKLSHREEGDVEEHRKSKQPAIYSEPTLRSNMVDIILLHSLGDGKKHFTARREALQNKNNMIMLPNAKSKASNSGKGRGKKQNGKKEVVDLRTLLVLCAQAVAADDCKSAQEFLKQIRQHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLINKRTSAADFLKAYYLYLAACPFRKITSFISNITIRTSSASSMRLHVIDFGILYGFQWPTFIQRLALRSGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAESFNVPFEYNAIAKKWETIQLEELKIDKDEYLIVTCFYRGKNLLDESVVVDSPRNKFLNLIRKINPDLFIHGIMNGAFNAPFFVTRFREALFHFSSLFDMLETIVPREDWERMLIEKEVFGREALNVIACEGCERVERPETYRQWQVRILRAGFLQQPFDRGIVERAIEKVRCTYHKDFVIDEDGQWLLQGWKGRIVYALSCWKPA. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01885 742 MobiDBLite consensus disorder prediction 42 65 - -
Seca2g01885 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Seca2g01885 742 MobiDBLite consensus disorder prediction 275 298 - -
Seca2g01885 742 MobiDBLite consensus disorder prediction 42 66 - -
Seca2g01885 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 296 733 IPR005202 -
Seca2g01885 742 MobiDBLite consensus disorder prediction 275 302 - -
Seca2g01885 742 Pfam GRAS domain family 369 740 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01885 Seca-Chr2 39219738 39223235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01885 70 741 GRAS Transcription Factor Family AT2G37650 54.319 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca2g01885 GRAS 8.2e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01885 - - gmx:100801824 1204.12