Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01850 ATGCAGTTGTCATTCTCAAACAAGGTCTCAGCCCTTCCTCAATTCCTGTCCGTCAAGACAACTCAGGAAGATAGACCAAGAAACACTATTCTTGATCCAATAGCTTCATCTGGATACATGACCATCTCAACTAACCAGAAACCATTCATGGGTGTAACACAGAAAAATTTGTCAATAGGCAAGCAAGCTGGCAACAAACTTGGAATGACAGTTTATCCTCTGCAATGTTCTGATGCACAGTTAGCTTGCCTTCAGGAAACAGGAATATTTTCAGTTTCCAACCAATGTAATCAAGTGACTCCTGTTCTTCAATCTAATTTGGCTACTACCGGATTGAACATGGTCAATTCAATCAGAAAACCACAACCTATTCTTTCCAAACCCTCTGGAACACCTAGTGGAACACCAGAAATTTTGTTTTTTTTTTCTAGGAATTGTTCCAAATCCTCTGGCACACCTGCTCAGTTGACCATTTTCTATGCTGGTTCAGTATGTGTGTTTGATGACATATCTCCTGAGAAGGTGGTTGGGCAGGTTATTTCTTATATGACACCGTTCGATATGTGGAAAAGAAAAAGCTACCATTTTCAAATGCTCCAAAGGAGGATAGGAACCTTGCAGACATACACCTGGGCCTCTATGAGAATGTGA 651 0.4071 MQLSFSNKVSALPQFLSVKTTQEDRPRNTILDPIASSGYMTISTNQKPFMGVTQKNLSIGKQAGNKLGMTVYPLQCSDAQLACLQETGIFSVSNQCNQVTPVLQSNLATTGLNMVNSIRKPQPILSKPSGTPSGTPEILFFFSRNCSKSSGTPAQLTIFYAGSVCVFDDISPEKVVGQVISYMTPFDMWKRKSYHFQMLQRRIGTLQTYTWASMRM. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01850 216 ProSiteProfiles Tify domain profile. 149 184 IPR010399 -
Seca2g01850 216 SMART tify_2 149 185 IPR010399 -
Seca2g01850 216 Pfam tify domain 152 175 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01850 Seca-Chr2 36814421 36816361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01850 1 175 Tify Gene Family AT3G17860 34.021 2.40e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca2g01850 tify 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01850 K13464 - gmx:100807288 221.09