Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01837 ATGTCCCAATCAACCCCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTACGTGTTGGAGTAAGGCGTCTAGCTCCTCTGCAGAACAGCATGCCTTCATCAGTGATTTCCAGTCAGAGCATGCACCTAGGAGTTCTAGCGACTGCATCTCATGCTGTTTCAACTCAGACTCTTTTTGTTGTATATTATAAGCCCAGGACAAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGGCAATCAACCAAAAATTTAGTGTTGGCATGAGGTTCAGGATGAGGTTTGAAGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGCCACAATAATTGGAGTAGAAGATATGTCTCCCCACTGGGTGAATTCAACATGGAGATCTCTTAAGGTTCAATGGGATGAGACTGCATCTTTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCCTTCTGGCTTCTAATCCTACATCTTCAGTTCCTCCTGTTGTAAACAATAAAAGGCCTCGGCTACCTAGTGAGGTTCCAGATCTTGACACAACATTAGGTGCCTCTACTTTCTGGGATGCAGGGAGGACACAATCAGATGTAACACAACTTAGTGACCATATGTGGCATCATAAGCAGAGTGATCATAATAGTAAAAACAGTTGCAATGGTATAATGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATTTATGTCATGACACAACTGATGATAACAAGAGTGTCTCAGTCTCACCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAAAAATGATAATTTGCTTGACCATGTTGACAAGGAGAACAAAGTAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGAGCTTATTGATCATACCAGGAACTCTCCTGCAGTGGAAAAGGCACCTTTACATGCAGAAAATGCATCCAGAGTCACTTCTGAGGGCTGTGTTAACACCTTGTCCAGAACTGATACAGAACATAAGTATGATATCCCAAAGGCTTCTACAGAAAGGAAACAAGAACAGCAGCAAGTTTCTCCAAAAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTGGACTTGACCATGTTGAATGGATATGATCAACTGATAGATGAGTTGGAGAAAATGTTTGACATAAAGGGACAGCTTCAACCAAGGAATAAGTGGGAAATTGTGTTCACTGATGATGAAGGGGACATGATGCTTGTGGGTGATGATCCATGGCCTGAGTTCTGCAATATGGTGAGAAGAATCTTCATTTGTTCCAGTCAGGATGTGCACAAAATGAGCTCAGGGAGCAAACTGCCTATTTCTTCAATAGAAGAGGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 1581 0.425 MSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLAPLQNSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQFIVSVNKYLEAINQKFSVGMRFRMRFEGDDSAETDKRFSATIIGVEDMSPHWVNSTWRSLKVQWDETASFPRPDRVSPWEIEPLLASNPTSSVPPVVNNKRPRLPSEVPDLDTTLGASTFWDAGRTQSDVTQLSDHMWHHKQSDHNSKNSCNGIMRNQTEGSWLSSPHSSCPSHLCHDTTDDNKSVSVSPWPISKTHSERLKNDNLLDHVDKENKVEAATSCRLFGIELIDHTRNSPAVEKAPLHAENASRVTSEGCVNTLSRTDTEHKYDIPKASTERKQEQQQVSPKETQSKQICSRSCTKVQMQGVAVGRAVDLTMLNGYDQLIDELEKMFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGSKLPISSIEEETVISSDTAET. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01837 526 FunFam Auxin response factor 131 204 - -
Seca2g01837 526 MobiDBLite consensus disorder prediction 206 225 - -
Seca2g01837 526 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 503 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca2g01837 526 MobiDBLite consensus disorder prediction 379 410 - -
Seca2g01837 526 FunFam Auxin response factor 410 503 - -
Seca2g01837 526 SMART B3_2 1 72 IPR003340 GO:0003677
Seca2g01837 526 Pfam AUX/IAA family 394 500 IPR033389 -
Seca2g01837 526 SUPERFAMILY CAD & PB1 domains 418 491 - -
Seca2g01837 526 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Seca2g01837 526 MobiDBLite consensus disorder prediction 395 410 - -
Seca2g01837 526 Pfam Auxin response factor 96 177 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca2g01837 526 Gene3D - 1 71 IPR015300 -
Seca2g01837 526 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Seca2g01837 526 Gene3D - 131 204 - -
Seca2g01837 526 MobiDBLite consensus disorder prediction 379 394 - -
Seca2g01837 526 CDD B3_DNA 8 70 IPR003340 GO:0003677
Seca2g01837 526 Pfam B3 DNA binding domain 7 70 IPR003340 GO:0003677
Seca2g01837 526 Gene3D - 411 503 - -
Seca2g01837 526 ProSiteProfiles PB1 domain profile. 415 496 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01837 Seca-Chr2 36130002 36134929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01837 1 508 B3 DNA Binding Superfamily AT4G23980 56.311 6.11e-178 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca2g01837 AUX_IAA 1.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01837 K14486 - gmx:100779003 813.913