Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01826 ATGTCTTTCAAGCTTGTGTCGGTGTTTTTTCTGGTGACAGTGGTAGCCAGTGAAGATAGCAGTTTCACCTATAATGGGTTTCAATCAACTCATTTGTATCTTGATGGTATTGCTGAGATCACCTCCAATGGCCTGCTCAGACTCACCAATGACACCAAACAAGAAAAGGGTCATGCTTTCTACCCAAATCCTATAGTTTTCAAGAACACCTTCAATGGAACCGTGTCTTCTTTTTCCACCACTTTTGTCTTTGCCATAAGATCTGAGTATCCAACTCTGAGTGGTCATGGGATTGTTTTTGTGGTTTCCCCAACAAAAGGGCTTCCAGATTCTCTTCCAAGTCAGTACCTTGGCCTCTTTAATAAGGCTAACAACGGCAACAGCAACAACCATGTTTTCGGTGTGGAACTTGACACCATTCAGAGCAGTGAGTTTGGAGATATCAATGACAACCATGTTGGAATTGATATCAATGACTTGAGGTCAGCTAATTCATCACCTGCAGGATATTACAGCACTGGTGGGTTAAAGAATTTGACCCTTTTCAGTGGCTATCCTATGCAGGTGTGGGTGGAATATGATGGGGAAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAATGTTGATAAACCAGAACGCCCTTTGTTATCATTGACCAAAGATCTTTCTCCAATTCTGAACAATAGCATGTATGTTGGATTCTCATCCTCTACTGGCTCAGTTTTAACTTCCCATTATGTTCTTGGTTGGAGCTTTAAGGTCAATGGCAAAGCTCAACAACTTGTAATCTCTGAACTCCCCAAGCTTCCTAGACTTGGTGAAAAAAAGGAGTCAAAGCTTTTAACCATTGGATTGCCTATGATATCACTTTGTTTGGTTTTTATTATCATTCTAGCAGTTGGTTATGTCATTAAAAGGAAGAAGAAATTTGCTGAGTTGCTAGAAGATTGGGAACAGGAATACGGCCCACATAGATTCAAGTTCAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAACTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAAATTGAGGTTGCAGTGAAGAGGGTGTCCCATGAATCCAGACAAGGGATGAGGGAATTTGTGTCAGAAATTGTTAGTATTGGACGTCTTCGCCACAGGAATTTGGTTCCTCTTCTTGGATATTGCAGGCGCAAAGGAGAGTTGCTTTTGGTCTATGATTACATGCCAAATGGAAGCCTAGACAAGTATCTCTATGACCAACCAAGAGTGACCCTGAATTGGAGCCAGAGATTTACAATCATCAAAGGGGTTGCTTCAGGTTTGTTTTATTTACATGAAGAATGGGAGCAAGTTGTGGTACACAGAGACATTAAGGCTAGCAATGTGTTGCTAGATGCAGAATTGAATGGCAGATTAGGGGATTTTGGTCTTGCAAGGTTGTATGACCATGGAACTGATCCTCAAACTACCCATGTGGTTGGAACTCTTGGGTATCTTGCCCCTGAGCATACTAGAACAGGTAAGGCAACTACAAGCTCTGATGTGTTTGCTTTTGGTGCATTTCTGTTGGAGGTTGCTTGTGGTAAGAGGCCCATAGAGCACAGAGGAGAAAGTGAGACTGTAGTTCTGGTTGATTGGGTTTTTGATTGCTGGAAAAAGGGTGAGATTCTTGAGGCAAAGGATACAAATTTGGGCACAGATTATAGGCCAGAGGAGGTGGAGTTGGTATTGAAACTTGGTTTGTTGTGCTCACATTCAGAGCCATTGGTTAGGCCAAGCATGCGCCTAGTTGTGCAGTACTTGGGGATGGATGTCCCTCTGCCAGATCTATCTTCGCTTAGCTTATCTTCCACTGGCCTAACCTTTGGGCACCATTTTGAAGATTTTGAGAACTTTCCTATGTCCTATCCTGTATCTGGGGATAAGCCGTTCTCCCATAGTACCTATACCTCAACTTCAGCTGCTGAATCACTTCTCTCTGGTGGTCGTTGA 2016 0.4266 MSFKLVSVFFLVTVVASEDSSFTYNGFQSTHLYLDGIAEITSNGLLRLTNDTKQEKGHAFYPNPIVFKNTFNGTVSSFSTTFVFAIRSEYPTLSGHGIVFVVSPTKGLPDSLPSQYLGLFNKANNGNSNNHVFGVELDTIQSSEFGDINDNHVGIDINDLRSANSSPAGYYSTGGLKNLTLFSGYPMQVWVEYDGEKKQIDVTLAPINVDKPERPLLSLTKDLSPILNNSMYVGFSSSTGSVLTSHYVLGWSFKVNGKAQQLVISELPKLPRLGEKKESKLLTIGLPMISLCLVFIIILAVGYVIKRKKKFAELLEDWEQEYGPHRFKFKDLYFATKGFREKELLGTGGFGRVYKGVMPISKIEVAVKRVSHESRQGMREFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYDQPRVTLNWSQRFTIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATTSSDVFAFGAFLLEVACGKRPIEHRGESETVVLVDWVFDCWKKGEILEAKDTNLGTDYRPEEVELVLKLGLLCSHSEPLVRPSMRLVVQYLGMDVPLPDLSSLSLSSTGLTFGHHFEDFENFPMSYPVSGDKPFSHSTYTSTSAAESLLSGGR. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01826 671 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Seca2g01826 671 Gene3D Transferase(Phosphotransferase) domain 1 416 620 - -
Seca2g01826 671 Pfam Legume lectin domain 20 267 IPR001220 GO:0030246
Seca2g01826 671 Gene3D Phosphorylase Kinase; domain 1 301 415 - -
Seca2g01826 671 SUPERFAMILY Protein kinase-like (PK-like) 320 612 IPR011009 -
Seca2g01826 671 Gene3D - 18 267 - -
Seca2g01826 671 ProSiteProfiles Protein kinase domain profile. 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01826 671 CDD lectin_legume_LecRK_Arcelin_ConA 21 257 IPR001220 GO:0030246
Seca2g01826 671 SMART serkin_6 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01826 671 PANTHER - 27 613 - -
Seca2g01826 671 Pfam Protein kinase domain 339 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01826 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Seca2g01826 671 CDD STKc_IRAK 345 609 - -
Seca2g01826 671 FunFam L-type lectin-domain containing receptor kinase S.4 416 622 - -
Seca2g01826 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 275 IPR013320 -
Seca2g01826 671 FunFam L-type lectin-domain containing receptor kinase V.9 19 260 - -
Seca2g01826 671 FunFam Lectin-domain containing receptor kinase A4.3 324 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01826 Seca-Chr2 35833940 35835955 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01826 16 671 Receptor kinase-like Gene Family AT2G37710 66.970 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca2g01826 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01826 - - gmx:100783815 1058.51