Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01823 ATGGCAAGCCTTCTTCAATTGTTATCTGTGTTGGTGTTCCTTTTGGTCCCAGTTTCATCCCAGGTTGACCAGCTCTTATATGCTGGATTCAAGGATGTGGGTGCCAACAATCTAACCTTGAATGGTGTAGCAGAAATAGAGAAAAATGGAATACTGAGATTGACAAATGAGACAAGCAGATTAATGGGTCATGCTTTTTACCCTTCTCCTTTTCAGCTAAAGAACTCCACCACTGGTAAAGTTCTCTCCTTTTCTTCCTCTTTTGCTCTGGCTATTGTCCCTGAGTATCCCAAGCTAGGTGGCCATGGCTTGGCTTTCACAATAGCAACTACTAAGGATCTCAAAGCTCTCCCTAGTCAGTATCTGGGTCTCCTCAATTCAAGTGATGTTGGTAATTTCTCCAATCATCTCTTTGCTGTTGAGTTTGACACTGTTCAAGACTTTGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGACATCAATAGCTTGCAGTCCAATGCATCTGCAACTGCAGCTTATTACAATCTCAATATCAAAAGTGGGGAACCTATTCTAGCTTGGGTTGATTATGACTCTGAACAAAATCTTATCAGTGTTACACTTTCTCCCTCTTCAACCAAACCCAAAAAACCAATCTTGTCTTTTCCTATGGATCTCTCACCTATTCTTCATGATACTATGTATGTTGGGTTCTCTGCATCAACTGGTTTGCTTGCTAGCTCTCATTACATCTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCTCTTGATCTATCTTCTCTCCCACAACTTCCACATCCAAAGAAGAAAAACACATCTTTGATAACAGGGGTTTCAGTTACTGTTGTTGTTATTGCATTGTGTTCTGTCTCTATTGGGATTTACCTGTTCAGGAAAATCAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAAATTGGACCACACAGATACTCCTACCAAGAGCTCAAGAAAGCTACAAAAGGTTTCAAGGACAAAGGGCTACTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAATTCAAAGATTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCTAAACAAGGCCTGAGGGAATTTGTATCAGAAATTGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAACTACTAGGGTGGTGCCGCCGCCGGGGTGATCTGCTTCTTGTGTATGATTTCATGGCTAATGGGAGCTTGGACAAGTACTTGTTTGAGGAGCCAGAGATTGTGCTAAGTTGGGAACAGAGGTTCAAGATAATAAAGGGTGTTGCTTCAGCTCTTTTGTATCTACATGAAGGCTATGAGCAGGTGGTAATACATAGGGATGTGAAGGCTAGCAATGTGCTGCTAGATTTGGAACTCAATGGAAGACTTGGTGATTTTGGATTGGCAAGATTGTATGAACATGGTGGTAACCCAAGCACTACAAGAGTAGTGGGAACTTTAGGCTATTTGGCACCAGAGTTGCCAAGAACAGGAAAGGCAACTCCAAGTTCTGATGTTTTTGCTTTTGGTGCACTTTTGATGGAGGTGGCTTGTGGGAGAAGGCCAATTGAGCCTAAGGCATTACCAGAAGAGTTGGTTTTGTTGGATTGGGTGTGGGATAAATACAAAGAAGGAAGAATACTTGATGTGGTGGACCCAAAACTAAATGGCAATTTTGATGAAAAAGAGGTGATTATGGTGTTGAAATTGGGGTTGATATGTTCCAATGATGTTCCCACTGTAAGACCTAGCATGAGGCAAGTAGTGAGGATTTTGGATGGAGAAGTTGAGTTGCCAGATGATTTGAGAAAGCCAGGAGGTATTGATCCACAAGAGGGATTTGATGAATTTTTGCACTCACTTGCATCTTCTTCATTTGATAAGATGAGCTCAAGCTCCTATTTTGGAAATAGAGACTTGGATACTGGTTTTCTTTCTTTTGCTAATTCACCTCATTCTCTTCTCCATGGCAGAGGAGAAACAAGGTGA 2025 0.4198 MASLLQLLSVLVFLLVPVSSQVDQLLYAGFKDVGANNLTLNGVAEIEKNGILRLTNETSRLMGHAFYPSPFQLKNSTTGKVLSFSSSFALAIVPEYPKLGGHGLAFTIATTKDLKALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINSLQSNASATAAYYNLNIKSGEPILAWVDYDSEQNLISVTLSPSSTKPKKPILSFPMDLSPILHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPHPKKKNTSLITGVSVTVVVIALCSVSIGIYLFRKIKNADVIEAWELEIGPHRYSYQELKKATKGFKDKGLLGQGGFGRVYKGTLPNSKIEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEEPEIVLSWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDLELNGRLGDFGLARLYEHGGNPSTTRVVGTLGYLAPELPRTGKATPSSDVFAFGALLMEVACGRRPIEPKALPEELVLLDWVWDKYKEGRILDVVDPKLNGNFDEKEVIMVLKLGLICSNDVPTVRPSMRQVVRILDGEVELPDDLRKPGGIDPQEGFDEFLHSLASSSFDKMSSSSYFGNRDLDTGFLSFANSPHSLLHGRGETR. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01823 674 SMART serkin_6 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01823 674 FunFam Lectin-domain containing receptor kinase A4.3 319 410 - -
Seca2g01823 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 274 IPR013320 -
Seca2g01823 674 PANTHER - 20 617 - -
Seca2g01823 674 SUPERFAMILY Protein kinase-like (PK-like) 316 609 IPR011009 -
Seca2g01823 674 FunFam L-type lectin-domain containing receptor kinase S.4 21 259 - -
Seca2g01823 674 CDD lectin_legume_LecRK_Arcelin_ConA 24 255 IPR001220 GO:0030246
Seca2g01823 674 Pfam Legume lectin domain 25 265 IPR001220 GO:0030246
Seca2g01823 674 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Seca2g01823 674 FunFam L-type lectin-domain containing receptor kinase S.4 411 616 - -
Seca2g01823 674 Gene3D Transferase(Phosphotransferase) domain 1 411 616 - -
Seca2g01823 674 CDD STKc_IRAK 340 606 - -
Seca2g01823 674 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Seca2g01823 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Seca2g01823 674 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01823 674 Pfam Protein kinase domain 335 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01823 674 Gene3D - 25 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01823 Seca-Chr2 35621523 35623568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01823 18 647 Receptor kinase-like Gene Family AT3G55550 60.714 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca2g01823 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01823 - - gmx:100784346 1151.35