LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g01807	ATGTCTTATTGCTACTTCCCCTTTACTTGCCAGGGAAAGATGGAGTTCAATGCCCAAAACTCCAATAAATCTGAGCAAATAAGATGGAACTCAGATGATGTAGGTTGTCCTGGCCAAGTTAAATCTTATTCTTGTAACTTTTGTAAGAGAGGGTTCTCAAATGCACAAGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAGCAATCTTCTGAAGAAAACTTGCTTTCTTTGGACATCTCAACCAAGAACTCAAGTGATGAGGAAGAGACTAATCAACCACCTCAAAGGGGCAAGTCCATTGGTAAAACAGAACTTCCTCATATTCCACCATTTGTTGCTACCAATAGTGTTGTGGTACAGAGGATTGAAGAGAAGAAAGCTGATTTAGATCTTGAGCTTAGGTTAGGGTTTGAGCCACAGGAGTCACCAACATTGAGCACCAGATCCTTCTTTTGA	474	0.4114	MSYCYFPFTCQGKMEFNAQNSNKSEQIRWNSDDVGCPGQVKSYSCNFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISTKNSSDEEETNQPPQRGKSIGKTELPHIPPFVATNSVVVQRIEEKKADLDLELRLGFEPQESPTLSTRSFF.	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g01807	157	ProSitePatterns	Zinc finger C2H2 type domain signature.	45	65	IPR013087	-
	Seca2g01807	157	Gene3D	Classic Zinc Finger	15	103	-	-
	Seca2g01807	157	ProSiteProfiles	Zinc finger C2H2 type domain profile.	43	70	IPR013087	-
	Seca2g01807	157	SUPERFAMILY	beta-beta-alpha zinc fingers	41	69	IPR036236	-
	Seca2g01807	157	MobiDBLite	consensus disorder prediction	68	112	-	-
	Seca2g01807	157	PANTHER	OS07G0101800 PROTEIN	14	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g01807	Seca-Chr2	35007396	35007869	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g01807	39	150	C2H2 Transcription Factor Family	AT3G53820	39.837	2.06e-20	80.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Seca2g01807		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g01807	-		-	mtr:25498560	204.527

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g01807	2	35007396	35007869	Seca2g01807	2	35007396	35007869	ECH