Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01806 ATGAAGAAGGGTCAATGTTTGATGTGGACTAAGAGAAAGTACTCTGTCAGCTCTAATTACCTCTCCTCCTATGATGATGACTCATGGGAAGAGAAAGCCTTTGCAAAAGATGCAGCATCTGGGTCTGATTGCATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGGGAATTCAAGTCAGCACAGGCTCTAGGTGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGATTAAAGCAGCCATCTAGCCCTCAAAATGAAATTCTATTTCATGATCTTGAAACTACTCACCCTCATAATCAAGCTCAAAATTCTTTGGCTTCTTTTGGTTACTTATACCAAACTGGATTGGATTATAGCACTAACCCTAATTCTGATAACCCTTCTCATGTTCTTCCTTCACCTTCTATGGTTTTGCCTAGAGAGAAAACCGAGACTTCCCCTGCTGATTCTTCTAAATCATGGTCAAATTTAGCTGAAGACTGTAGATTATATTCAAGTAAGTTCGATCCTGAAGCTGGTGTTGAGAAAAATTTGAAGGGATTGGACTCTGAGTGTAGGAGTGATGAGGAGAATAGTGATAAAACTGACATGGCTGTTAGTTTGAACTTGTTTGTGTGTAAAGCTGACCCACCTGTGCAGTTTGAGACAAAAGAGACAGATTTAAGTTTCAAGAAGAGGAAAACAGATGCTTCATCAAATCCATTTTTCTCAAAATCAAGCTTGGTAGATAGACATCACATGCAGTCACAACAAATGTTTGAATTTAGCCCTAATTCCTTAGAAGAACTAGATCTGGAGTTAAGGCTTGGTTACAGGCCCAAGGTATAG 837 0.3943 MKKGQCLMWTKRKYSVSSNYLSSYDDDSWEEKAFAKDAASGSDCIWPPRSYSCSFCRREFKSAQALGGHMNVHRRDRARLKQPSSPQNEILFHDLETTHPHNQAQNSLASFGYLYQTGLDYSTNPNSDNPSHVLPSPSMVLPREKTETSPADSSKSWSNLAEDCRLYSSKFDPEAGVEKNLKGLDSECRSDEENSDKTDMAVSLNLFVCKADPPVQFETKETDLSFKKRKTDASSNPFFSKSSLVDRHHMQSQQMFEFSPNSLEELDLELRLGYRPKV. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01806 278 PANTHER OS07G0101800 PROTEIN 23 276 - -
Seca2g01806 278 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Seca2g01806 278 Pfam C2H2-type zinc finger 51 75 - -
Seca2g01806 278 SMART c2h2final6 51 73 IPR013087 -
Seca2g01806 278 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Seca2g01806 278 MobiDBLite consensus disorder prediction 122 155 - -
Seca2g01806 278 Gene3D Classic Zinc Finger 47 107 - -
Seca2g01806 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01806 Seca-Chr2 34897572 34898441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01806 1 276 C2H2 Transcription Factor Family AT5G06070 35.315 1.75e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g01806 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01806 - - gmx:100810800 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01806 2 34897572 34898441 Seca2g01806 2 34897572 34898441 ECH
Seca2g01806 2 34897572 34898441 Seca8g01022 8 14298757 14299542 ECH