Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01780 ATGAAGATCCAAGACCCCTCTCATCTCCTCCTCCTCACAATAACAATAACAATAATCACCCTATCTTCCACCCCATCTATCACTGCTCTCAAACACTGTCCAAACTGTGGCCAAACCCAAGTACCATACCCATTAAGCACATCACCAAACTACGGTGACCAATCCTACAAGATCCGCTGCACTTTAGGCAAACTCTACCTAGACTCCATCAACGGTTCCTCTTACACGATCACATCCATCAACCCAACATCTCAGCGCTTCATTATTCAACCACCAGGTTTCGCCAACGACACGTGTACGTCCACCGATTTCAAAACCGAAGGAATGTGGCTTGACACCAACTCACCCTTCAACATCACATCAAGCAACACAAGAATTCTCATGAACTGTTCCCAAGACGTCTTCACCACGCTTTGGAACTGCTCCTCAACGAGCATTTGCCATAAGTATATTAAGGACAATGCTGTAGCGGCGAAGGCTTGTGGAGTAAAGAGCAGTGCCTCGCAGATATGCTGTGATGTGAAGACTGGTGGGTCTTCTACTGCTCATAGATTGAGGGTTAGGAAAGAACGTTGTGCGGCGTATGTTAGTTTTCCCAATTTGGATTCTTCTTTGCCTGTTAGTATGTGGCAGCCAGGGGTGGAGATAGAATGGGTGTTGCCGGAGGAGCCACCGTGTAAGGTGACTAAGGATTGCTTCGATTTGGTGAATTCTGGTTGTTTGCCGGATCCGGCGGCTGGTGGAGTGAGAAAGTGCTTGTGCAAGTCTGGCTTTCAGTGGGATCCTGTAAATGGAATATGTCAAAATATCAGTAAGTGTCAACATGGAAGAGGTTGCAAGCATCGTGAGAAGAAAGGTCCCCTTATTGGAGGCTTAGCAATGGCAGGGGCAGCCATGCTAACAGGATCCTTGATTACTGCATTGGTCTTTCACCTTCGGAGACAAAGAATCCAAAGAGAAACCCAAGAAAGCATAAGCAGGGCACGCAACATATTAAACACCGACAACAACTATGGCAAATCAGCAAAGATCTTCACCATGAAAGAGATCACAAAAGCAACCAACAACTTCTCCAAAACTAACCTCCTTGGCACTGGTGGTTTTGGTGAGGTCTTCAAAGGAACACTTGATGATGGAACCATCACAGCCATCAAGAGAGCCAAGCTTGGCAACACAACAGGCAATGATCAAATACTCAATGAAGTCAGAATCCTTTGTCAGGTTAACCACAGGAGCCTAGTCAGACTCTTAGGTTGTTGTGTTGAGCTTCAAGTACCACTTCTTATCTATGAGTATATCCCCCATGGAACACTCTTTGAGCACTTACATAACACCAACTCTAACAAATGGATCCATCTTGGGTGGCATTCAAGGCTAAGAATTGCACACCAAACTGCTGAAGGGCTTGCTTATCTTCACAATGCAGCTATTCCTAGAATCTTCCATAGAGACATTAAGTCAAGTAACATTCTTTTAGATGATAACCTTGATGCTAAAGTATCTGATTTTGGGCTTTCAAGGTTGGCTGTGAGTGAAGCAAGTCACATCACAACATGTGCTCAAGGAACATTGGGATATCTTGACCCTGAATATTATGTGAACTTTCAGCTCACTGATAAAAGTGATGTGTATAGTTTTGGGGTGGTTTTGTTGGAGTTGTTGAGTTCTAAAAAGGCTATTGATTTTAATAGAGAAGAGGAGGATGTGAACTTGGTGATTTTAATGAAAAGGGCTTTGAAGGAAGGGAGGTTGATGGATGAAGTTGATCCTATGCTGAAAAATGGAGCTAGTAGACTTGTGTTGGAGAGTATGAAGGCATTTGGGTCTCTTGCTGTGGCTTGTTTAGATGATAGGAGACAAAATAGGCCTTCAATGAAAGATGTTGCTGATGAGATTGAGTATATTATTGGTATTCTTGCTGATGTTAAGGCTGAGGTTTTAGAGGTTTAG 1950 0.4374 MKIQDPSHLLLLTITITIITLSSTPSITALKHCPNCGQTQVPYPLSTSPNYGDQSYKIRCTLGKLYLDSINGSSYTITSINPTSQRFIIQPPGFANDTCTSTDFKTEGMWLDTNSPFNITSSNTRILMNCSQDVFTTLWNCSSTSICHKYIKDNAVAAKACGVKSSASQICCDVKTGGSSTAHRLRVRKERCAAYVSFPNLDSSLPVSMWQPGVEIEWVLPEEPPCKVTKDCFDLVNSGCLPDPAAGGVRKCLCKSGFQWDPVNGICQNISKCQHGRGCKHREKKGPLIGGLAMAGAAMLTGSLITALVFHLRRQRIQRETQESISRARNILNTDNNYGKSAKIFTMKEITKATNNFSKTNLLGTGGFGEVFKGTLDDGTITAIKRAKLGNTTGNDQILNEVRILCQVNHRSLVRLLGCCVELQVPLLIYEYIPHGTLFEHLHNTNSNKWIHLGWHSRLRIAHQTAEGLAYLHNAAIPRIFHRDIKSSNILLDDNLDAKVSDFGLSRLAVSEASHITTCAQGTLGYLDPEYYVNFQLTDKSDVYSFGVVLLELLSSKKAIDFNREEEDVNLVILMKRALKEGRLMDEVDPMLKNGASRLVLESMKAFGSLAVACLDDRRQNRPSMKDVADEIEYIIGILADVKAEVLEV. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01780 649 FunFam Wall-associated receptor kinase-like 20 433 645 - -
Seca2g01780 649 SMART serkin_6 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01780 649 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Seca2g01780 649 SUPERFAMILY Protein kinase-like (PK-like) 337 630 IPR011009 -
Seca2g01780 649 Pfam Protein kinase domain 358 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01780 649 CDD STKc_IRAK 363 633 - -
Seca2g01780 649 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 635 IPR045274 GO:0007166
Seca2g01780 649 Gene3D Phosphorylase Kinase; domain 1 329 432 - -
Seca2g01780 649 Gene3D Transferase(Phosphotransferase) domain 1 433 641 - -
Seca2g01780 649 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 329 432 - -
Seca2g01780 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Seca2g01780 649 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01780 Seca-Chr2 34303887 34308983 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01780 23 645 Receptor kinase-like Gene Family AT5G02070 54.803 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca2g01780 Pkinase 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01780 - - gmx:100775709 969.918