Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01760 ATGGACATAAGCAGATTCAATATCCAAATCAAGCTTCAAATCAAGTGGGTAATCATGTTAGCAACCACTCAAGGTGAAGATCTATGGATAACAACAGTCACTCAAGCTCAATTAGAAGGCAGGCGTGGAGTGGTTATACCAGCAAGAGTTGTCACCAATTACTTCCACAACAGGCCTCACGAATTTCAGGTTAGATTACCAAATGGCGATGTGAAAACGTGGAAACTAATTTGGAGTCAGCGAATACCAATTGAATGCAAAATTGGACATGGATGGAGTGAATTTTGTACCACAAATGCGTTGCGCAAAGGTGACCAGATCAGGTTTTGGAAATTGGATGATGAAGGCTCCATCAGAATCATTCTTACAAGATCATTATCTTGA 384 0.4036 MDISRFNIQIKLQIKWVIMLATTQGEDLWITTVTQAQLEGRRGVVIPARVVTNYFHNRPHEFQVRLPNGDVKTWKLIWSQRIPIECKIGHGWSEFCTTNALRKGDQIRFWKLDDEGSIRIILTRSLS. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01760 127 Pfam B3 DNA binding domain 30 111 IPR003340 GO:0003677
Seca2g01760 127 Gene3D - 19 124 IPR015300 -
Seca2g01760 127 CDD B3_DNA 30 124 IPR003340 GO:0003677
Seca2g01760 127 ProSiteProfiles B3 DNA-binding domain profile. 29 126 IPR003340 GO:0003677
Seca2g01760 127 SUPERFAMILY DNA-binding pseudobarrel domain 29 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01760 Seca-Chr2 33855245 33855848 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g01760 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01760 - K22452 rcu:107261092 41.5874