Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01739 ATGGCTGAGGGTTTTGAACATTTCCATATCCCACAACAAAGCAGAAGAGATAAGTTAAGAGTTTTGGGTCAGACCCAAACGGGTTTTGTTGAATCTTCCCATAATACCCTTCATCCTGGTTGTGCAACTTTACCTTCTCTCTATGATCCTTCTCTGATTTCCTCTGATTTGTTAGCTTGTGCTAACCAACAAGGTCACGGCTTTCATAGTAACCACAATAACGTTAACGTTAACCCTCTTTCTGCTACCAACAACGAACCTTGTAAAGCAAACCAAGGTGATTCTATGAAGGAAGAAGGTTCCAATTTGATGATGAGATTTGCAGGAACAGTAGGAGGGGTTGTGAATGGTTCTTCTTCTTCTTCAACATCTTCGTTTTCTCATCACCATGCTTACTTAGATCCTGAATCGTCTTTGCATATGAACCCAGGTGCTGCTGGTGCTGCAATTCAAGTTATTAACAGTAACCCTTTTCTTTATCAACCACAGAGTCTTCAGAACCTTCGAGAATTTGACCAGAGCTACAATAATGGAAGTGAGATAATGGTGTTCAAGCCTGAACCTTTATCTTTGTCTTTGTCATCCCACAACAGCACTCACCATGAAATGAATCTTCAGCGATATGGGTCTGTTATTTATAGTGATAAAGTTGGTGGTGGTGGTGGTGTGGTTCCTGGTTTGGTTGGAGGAGGGAGTGGTTCTTCTGCCTCGAATGAAGTTTCGAGAAACTCAGTTCCACTGGGACCATTTACAGGTTATGCCTCGGTATTGAAAGGATCGAGGTTCTTGAAGCCTGCACAACAATTATTGGAAGAGCTATGTGATGTTGGGATTCGTGGAGTTTATGGTGAGAAAATCGCTGCTGATGCATCTTTAATGGAAACTCCTTCAGAGAGTTTAAGTGCTAGTGGAATTGGTGTGGATGATCCACTTATTGGAGATGGGAATCATGAGGGTAGCAAGAAGAAGTCCAGGTTATTAACCATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAGATCCATGCAGTAGTAACTTCATTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATACTTAAAGAATGCAATTACTGACCAGCTTCAGTTTATCAGTAAGGCTCATTTTCAGATAAGCAATAATAGGAAGGATGAATCTCCAAGGTTTCACAACACCGATAGAGGCCCTTACAGCCAAAGGCCAGGCTTTCTAGAGCACCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCCGTGAGCGTCCTCCGGGCATGGTTGTTTGAACACTTCCTCCACCCTTATCCTACTGATACGGATAAGCTAATGTTGGCTAAACAAACTGGTTTATCTCGTAACCAGGTGTCTAATTGGTTTATCAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAAGCTCAAAATAAATCACAAAGGGAAGAACATAGTAGGAACAATTTGAGTGATCATTTACCTTCAGATAACATTCCTGAGAATCCATCTACCACAATGGATAAGTTTCAGGATGTAACTTACAGACGCAGTAGAAATGAACTTCCTAATATGCAAGTGAGGAATCAAGAACAACAACTGAATCAGACTAACACAAGCAACCAACAAGTGAGTGCAGTTGGAGTGAGCATGGGGAATGGTGCAAGCAATGGTGTTTCTCTAACACTCGGTCTTCATCAAAATCATGGAATTGGGTTATCTGAACCCTTTGGCATGAGTGCAGCACATCGTTTTGGTCTTGCTCTTCAACCTCATGAGGGCTATGTTACAAATGGCTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATAGGAGGGCAACTTTTGCATGACTTTGTAGGCTGA 1947 0.4201 MAEGFEHFHIPQQSRRDKLRVLGQTQTGFVESSHNTLHPGCATLPSLYDPSLISSDLLACANQQGHGFHSNHNNVNVNPLSATNNEPCKANQGDSMKEEGSNLMMRFAGTVGGVVNGSSSSSTSSFSHHHAYLDPESSLHMNPGAAGAAIQVINSNPFLYQPQSLQNLREFDQSYNNGSEIMVFKPEPLSLSLSSHNSTHHEMNLQRYGSVIYSDKVGGGGGVVPGLVGGGSGSSASNEVSRNSVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGIRGVYGEKIAADASLMETPSESLSASGIGVDDPLIGDGNHEGSKKKSRLLTMLDEVYRRYRQYYQQIHAVVTSFEYVAGLGNAAPYASLAINAMSKHFRYLKNAITDQLQFISKAHFQISNNRKDESPRFHNTDRGPYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQNKSQREEHSRNNLSDHLPSDNIPENPSTTMDKFQDVTYRRSRNELPNMQVRNQEQQLNQTNTSNQQVSAVGVSMGNGASNGVSLTLGLHQNHGIGLSEPFGMSAAHRFGLALQPHEGYVTNGFESQNRHFGRDVIGGQLLHDFVG. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01739 648 SMART HOX_1 429 493 IPR001356 GO:0003677
Seca2g01739 648 MobiDBLite consensus disorder prediction 498 536 - -
Seca2g01739 648 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 509 - -
Seca2g01739 648 FunFam BEL1-like homeodomain protein 9 432 494 - -
Seca2g01739 648 MobiDBLite consensus disorder prediction 518 536 - -
Seca2g01739 648 Gene3D - 432 494 - -
Seca2g01739 648 Pfam Associated with HOX 256 383 IPR006563 -
Seca2g01739 648 SMART prehox3 251 384 IPR006563 -
Seca2g01739 648 MobiDBLite consensus disorder prediction 401 420 - -
Seca2g01739 648 CDD homeodomain 429 490 IPR001356 GO:0003677
Seca2g01739 648 Pfam Homeobox KN domain 446 485 IPR008422 GO:0003677|GO:0006355
Seca2g01739 648 SUPERFAMILY Homeodomain-like 431 496 IPR009057 -
Seca2g01739 648 ProSiteProfiles 'Homeobox' domain profile. 426 489 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01739 Seca-Chr2 32977015 32981985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01739 172 648 Homeobox Transcription Factor Family AT5G02030 48.362 2.11e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca2g01739 POX 7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01739 - - vun:114185080 746.117