Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01718 ATGAATGCACAAAACTCTACCTGTGGCAGCTGCAGCAGTAAGCATTGTGATATCATCATGAGAGCGGACATTGACAACAGAGCTAACCACGGAAGCAAGTCACGAACAAAACTGGATATTACAACAAACCTGGTGGATGGAACCGCCGGAAACCACCACGGCGCGGTAACCTCAGGCGGAGGACGGCGATGTGAACGGTGCTGTGCTACTAGGGTTCAGAGAAATCCATTGCTGCTGCTAGGTTACTACCATTGGAGGGTTGCCAGCTCTAGCTACCCCTTGACCATGTCACGTGCAGTTTGGTCCTTATACCTTGTCTTGTTTCTTCTCCTCATCACTACAAACTTGTTGTGGTTTCATCCCAAAAGATTTGCCTCTGCCTTGGGAAATGAGACTGATTACTTGGCACTAGTCAAATTTAAAGAAGCAATATCCAAAGACCCTTTTGGAGTGCTAGCCTCTTGGAATAGTTCTAGCCACTTTTGCAACTGGCATGGAGTCACATGCAACCATCAACATCAAAGAGTTACAGAGCTGAACCTAACAAGATATCAGTTGCATGGTTTCATATCACCCCACATTGGGAATCTCTCATTTCTAAGAACCCTCCTCCTTGAGGACAATAACTTCTATGGTGAAGTGCCACAAGAACTAGGTCATTTATTTCAATTGCAGGTACTCTATTTCACTAATAACACACTAAGTGGGGAATTTCCCATTTACTTGACAAATTGCTCTGAACTAAGGAGCTTGAGTTTACATGGGAATAATTTTACTGGTCAAATACCAATGGTGATTGGTTCTCTAAAGAAGCTTCAGGTGTTACAAATTTCTAAAAACAATCTAGTTAGGCCAATCCCAACTTCCATAGGGAATCTTTCATCCCTTATTAGACTTACTATGGCTGAAAATAACTTGGAGGGAAACATACCAGAAGAAATAGGCCATTTGAAAAATTTAACATTGGTCTATTTGGGAGTTAATAAATTTTCTGGTACACTTCCTTCTTCACTTTACAATTTGTCTTCTCTTATTGGCATTTCAGTTGCAGCCAATCAATTCCATGGTTCTCTTCCATCCAACATGTTCCTCACCTTCCCTAATCTTAGGTTGGTTGCAATAGGTGAGAATAAATTCTCAGGCCCAATACCAACTTCCTTAACAAATGCATCTGGGATTCAAGTGTTTGACATTGTTCAAAACCATTTTACAGGACAAGTTCCAAGTTTAAGAGAGCTAAAAGATCTTTCACTTCTAAATCTAGGTTCAAATTATCTTGGTAGCAATTCATCTAATGATTTGGAGTTTTTGAAGTCTTTAGCAAACTCTAGTTTGTTAGATAGATTGTATATGGATAACAATAATTTTGGAGGCCATTTTCCCAATATTTTGGGTAATTTGTCCACCCAACTCACTCAGTTAGGATTTGGTGGCAATCAGATATCTGGAAAAATTCCTATAGAAATAGGAAATCTTGTTAACTTGATTGTTTTGGGCATGGATGATAACCTCCTAACTGAGATCATTCCAGCTACTTTTGGCAAGTTTCAGAAGATGCAAGTATTAGGTTTGTCAGGAAACAGATTGTCTGGAGAGATACCAGCTTTCATTGGAAATCTCACTCAGTTGTTTCAACTGGATTTATCAAGGAACAAGTTTGTTGGAAATATTCCTTCAACTATTGGAAATTGCAGAAACTTGCAATGGCTAGACATTTCACAAAACAACCTTATTGGAGCTATACCAACAAAGGTTATTGGCCTTTCCTCTTTATCAACACTTTTGAACCTATCACATAACTCTTTAAGTGGTCCTTTGCCTGTAGAGGTGGGAATGTTACAAAATCTTAATAAGCTTGATGTGTCTGAAAATAATCTCTCTGGTGGTATTCCTACTACAATTGGACAATGCTTAAGAATGGAGTACCTTTTTGTACAAGGAAATTCCTTCCAAGGTATCATACCATCTTCTTTGGCTTTTCTTAAAGGTCTTCGAGAGTTAGACTTGTCACAAAACAACTTGTCAGGATCAATTCCAGAAGGATTACAGAACATTTCTACTTTGGAATACTTTAATGCTTCTTTTAACATGTTAGAGGGTGAGGTGCCAAAAGATGGTGTCTTCCAAAATGCAAGTGGTGTTTCACTGACTAACAATGGAAAGCTTTGTGGTGGGGTATCTGTGCTAAAGCTTCCACCTTGTCCATTAAATGCTATGAAAAAGAAAAAACAACAAAAACTTTTGTTGATAGTGGTGATAGTCTGTTCTGTTGTATTCCTTCTTCTATTGTCATGTGTTGCAGCTATCTATCAGATAAGGAAAGGAGTCAAAGGACATAAAAATGTATCAATTGATTCAACAATTGACCAACTTCCTCAAGTATCATATCAGGACCTTCACCATGCAACTAATGGTTTCTCAACTAGCAAATTGATAGGTACTGGAAGTTTAGGCTTTGTGTATAAAGGATTTCTTGATTTAGAAGAAAGAGTTGTGGCAATAAAGGTTTTCAAACTTCAAGTGAAAGGAGCTTACAAAAGTTTCATTGCTGAATGTAATGCACTCAGAAATATCAGACACAGAAATTTAGTGAAGGTTTTCACATGTTGCTCTAGTGTGGACAACAATAGAAATGAATTTAAAGCTTTAGTTTTTGAGTACATGTCAAATGGAAACTTGGAGGAATGGTTGCATCTAGAGAAAGAAAGTGTTGAGCATCCAAGAGTATTGAACCTTGAGAAAAGGCTAGAAATTGTTATTGATGTTGCTTCTGCATTACATTATCTTCACTATGAATGTGAGCAAGCCATTATTCATTGTGATTTAAAGCCAAGCAATGTTCTTCTAGATGATGACATGGTAGCTCATGTGAGTGATTTTGGCTTAGCAAGACTTTTGTCAACAACTGATGGAGAAACCAATAAGCAAACTAGCACAACTGAAATAATGGGGACTATAGGTTATGCTCCTCCAGAGTATGGAATAAGTTCTCAAGTGTCAACAGAAGGTGATGTGTACAGCTTTGGGATTTTGGTTCTGGAGATGTTAACTGGGAGAAGGCCAACAGGAGAAATGTTTAGAGATGGGAACAATCTCCATAATTATGTTCAAAATTCATTTCCTAATAATATTTTGCAGATTGTTGATGCAACTCTTCTACCAGAGGTAGATGAATATCCCATCCTAAGTGTAGATGAAGAAAAGATCTTTTTGGAGACTGCAACACATTTTCATCATGATGTTGAGAAGTGTTTATTTTCATTACTTAAAATTGGACTTGCTTGTTCAGTGGAGTCACCAAGAGAAAGAATAAATATGATGGATGTCATGAGAGAGCTCAATATAATTAGCAATGATTTCATTGCTTAA 3369 0.3776 MNAQNSTCGSCSSKHCDIIMRADIDNRANHGSKSRTKLDITTNLVDGTAGNHHGAVTSGGGRRCERCCATRVQRNPLLLLGYYHWRVASSSYPLTMSRAVWSLYLVLFLLLITTNLLWFHPKRFASALGNETDYLALVKFKEAISKDPFGVLASWNSSSHFCNWHGVTCNHQHQRVTELNLTRYQLHGFISPHIGNLSFLRTLLLEDNNFYGEVPQELGHLFQLQVLYFTNNTLSGEFPIYLTNCSELRSLSLHGNNFTGQIPMVIGSLKKLQVLQISKNNLVRPIPTSIGNLSSLIRLTMAENNLEGNIPEEIGHLKNLTLVYLGVNKFSGTLPSSLYNLSSLIGISVAANQFHGSLPSNMFLTFPNLRLVAIGENKFSGPIPTSLTNASGIQVFDIVQNHFTGQVPSLRELKDLSLLNLGSNYLGSNSSNDLEFLKSLANSSLLDRLYMDNNNFGGHFPNILGNLSTQLTQLGFGGNQISGKIPIEIGNLVNLIVLGMDDNLLTEIIPATFGKFQKMQVLGLSGNRLSGEIPAFIGNLTQLFQLDLSRNKFVGNIPSTIGNCRNLQWLDISQNNLIGAIPTKVIGLSSLSTLLNLSHNSLSGPLPVEVGMLQNLNKLDVSENNLSGGIPTTIGQCLRMEYLFVQGNSFQGIIPSSLAFLKGLRELDLSQNNLSGSIPEGLQNISTLEYFNASFNMLEGEVPKDGVFQNASGVSLTNNGKLCGGVSVLKLPPCPLNAMKKKKQQKLLLIVVIVCSVVFLLLLSCVAAIYQIRKGVKGHKNVSIDSTIDQLPQVSYQDLHHATNGFSTSKLIGTGSLGFVYKGFLDLEERVVAIKVFKLQVKGAYKSFIAECNALRNIRHRNLVKVFTCCSSVDNNRNEFKALVFEYMSNGNLEEWLHLEKESVEHPRVLNLEKRLEIVIDVASALHYLHYECEQAIIHCDLKPSNVLLDDDMVAHVSDFGLARLLSTTDGETNKQTSTTEIMGTIGYAPPEYGISSQVSTEGDVYSFGILVLEMLTGRRPTGEMFRDGNNLHNYVQNSFPNNILQIVDATLLPEVDEYPILSVDEEKIFLETATHFHHDVEKCLFSLLKIGLACSVESPRERINMMDVMRELNIISNDFIA. 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01718 1122 ProSiteProfiles Protein kinase domain profile. 806 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01718 1122 SMART serkin_6 806 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01718 1122 Pfam Leucine rich repeat N-terminal domain 131 170 IPR013210 -
Seca2g01718 1122 SMART LRR_typ_2 540 564 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 269 293 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 317 341 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 613 637 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 492 515 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 197 221 IPR003591 -
Seca2g01718 1122 SMART LRR_typ_2 661 684 IPR003591 -
Seca2g01718 1122 Pfam Protein kinase domain 807 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01718 1122 FunFam LRR receptor-like serine/threonine-protein kinase EFR 432 740 - -
Seca2g01718 1122 Gene3D Ribonuclease Inhibitor 130 410 IPR032675 -
Seca2g01718 1122 SUPERFAMILY L domain-like 130 426 - -
Seca2g01718 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Seca2g01718 1122 SUPERFAMILY L domain-like 469 724 - -
Seca2g01718 1122 PANTHER OS04G0122200 PROTEIN 315 1111 - -
Seca2g01718 1122 SUPERFAMILY Protein kinase-like (PK-like) 782 1116 IPR011009 -
Seca2g01718 1122 Pfam Leucine rich repeat 495 553 IPR001611 GO:0005515
Seca2g01718 1122 Pfam Leucine rich repeat 640 698 IPR001611 GO:0005515
Seca2g01718 1122 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 888 1122 - -
Seca2g01718 1122 Gene3D Phosphorylase Kinase; domain 1 786 887 - -
Seca2g01718 1122 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 132 240 - -
Seca2g01718 1122 Gene3D Ribonuclease Inhibitor 411 743 IPR032675 -
Seca2g01718 1122 Gene3D Transferase(Phosphotransferase) domain 1 888 1120 - -
Seca2g01718 1122 FunFam LRR receptor-like serine/threonine-protein kinase EFR 777 887 - -
Seca2g01718 1122 FunFam Leucine-rich repeat receptor protein kinase EMS1 241 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01718 Seca-Chr2 32477402 32482851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01718 130 1120 Receptor kinase-like Gene Family AT3G47570 46.300 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca2g01718 Pkinase 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01718 - - gmx:100801459 1178.31