Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g01704 | ATGTCTACTTTGCAGATGTCCCATGTCGATTTAGAGCAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATTTGAGTGGTGAAGGGAGCCTGTGTTTCTCTGATGCTGATGATGGTTCCAGCTATTCTCGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTGATTCTGGGAGAGCTTCTTCTGCTACTGATTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCAGAGATTAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAGTCTGGTGCTCCCATCGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCCCACAAGCACTGTGCTGAGACCTGGTTCAAGATTAAGGGAAATAGGGACCTGTGA | 462 | 0.4589 | MSTLQMSHVDLEQGNHRRSVVGSDLSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPEVGGVPDSGRASSATDCSVEVETRTGVPEIKVHLAKVERDCRICHMGLESESHESGAPIELGCSCKDDLAAAHKHCAETWFKIKGNRDL. | 154 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g01704 | 153 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 97 | 153 | IPR011016 | GO:0008270 | |
Seca2g01704 | 153 | SMART | ringv_2 | 104 | 151 | IPR011016 | GO:0008270 | |
Seca2g01704 | 153 | Pfam | RING-variant domain | 105 | 149 | IPR011016 | GO:0008270 | |
Seca2g01704 | 153 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 152 | IPR013083 | - | |
Seca2g01704 | 153 | PANTHER | ZINC FINGER, RING-CH-TYPE | 16 | 151 | - | - | |
Seca2g01704 | 153 | SUPERFAMILY | RING/U-box | 102 | 150 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g01704 | Seca-Chr2 | 31792279 | 31795661 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g01704 | 69 | 151 | C3H Transcription Factor Family | AT5G05830 | 67.470 | 4.80e-36 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g01704 | - | - | gmx:100808666 | 283.493 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g01704 | 2 | 31792279 | 31795661 | Seca2g01704 | 2 | 31792279 | 31795661 | ECH | |
Seca2g01704 | 2 | 31792279 | 31795661 | Seca6g02177 | 6 | 82286702 | 82289398 | ECH |