Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01704 ATGTCTACTTTGCAGATGTCCCATGTCGATTTAGAGCAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATTTGAGTGGTGAAGGGAGCCTGTGTTTCTCTGATGCTGATGATGGTTCCAGCTATTCTCGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTGATTCTGGGAGAGCTTCTTCTGCTACTGATTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCAGAGATTAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAGTCTGGTGCTCCCATCGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCCCACAAGCACTGTGCTGAGACCTGGTTCAAGATTAAGGGAAATAGGGACCTGTGA 462 0.4589 MSTLQMSHVDLEQGNHRRSVVGSDLSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPEVGGVPDSGRASSATDCSVEVETRTGVPEIKVHLAKVERDCRICHMGLESESHESGAPIELGCSCKDDLAAAHKHCAETWFKIKGNRDL. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01704 153 ProSiteProfiles Zinc finger RING-CH-type profile. 97 153 IPR011016 GO:0008270
Seca2g01704 153 SMART ringv_2 104 151 IPR011016 GO:0008270
Seca2g01704 153 Pfam RING-variant domain 105 149 IPR011016 GO:0008270
Seca2g01704 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 152 IPR013083 -
Seca2g01704 153 PANTHER ZINC FINGER, RING-CH-TYPE 16 151 - -
Seca2g01704 153 SUPERFAMILY RING/U-box 102 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01704 Seca-Chr2 31792279 31795661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01704 69 151 C3H Transcription Factor Family AT5G05830 67.470 4.80e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01704 - - gmx:100808666 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01704 2 31792279 31795661 Seca2g01704 2 31792279 31795661 ECH
Seca2g01704 2 31792279 31795661 Seca6g02177 6 82286702 82289398 ECH