Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01697 ATGCTTCAATCCATGAAGCTAGTACCCTTTTGGCTGCTACTTGTAATGTGCTTTTGTGCATTCACAGTGGCGTCTTCTCAACATGTTACAAGTACTTCCAAAAGTGTTTCATCTACTTTTGCCACATTTCAAAGTAGACAAGCAAGTGCTCTGTTAAAGTGGAAAGCCACCTTTGACAAGCAAAGCCAGGCTTTGCTATCTTCATGGAGTGGTAATAGTTCATGCAATTGGCTGGGAATTATGTGTGACAAGTCCAGATCCGTTTCCAACATAAACCTTACATCTATTGGACTAAGAGGTACGCTTGAAAGTCTCAATTTCTCTTCACTTCCAAACATCCTCACTCTAAATATAAGTCACAACTCATTGAATGGAAGTATTCCTCCCCACATTGGGGTGTTGTCTAAACTCTCCCATCTTGATCTTAGTCACAATAATCTCTCTGGAACAATTCCATATGAGATAACACAATTAGCCAGCCTTCAAATTTTACATTTGGCTAATAATGTTCTCTCTGGTTCCATTCCTAGAGAAATTGGTTCATTAAGGAATTTGAGAGAGTTTAGTATTGATTTTGCCAATCTCACAGGGACAACTATCCCAATTTCTATATGGAAACTAGCCTCTTTGTCATATCTTTCTTTTTGGAAGTGCAATCTCACAGGGTCTATCCCAATTTCTATAGGAAATTTGGCCAACTTGTCATATCTAGATTTAACAGAGAACAATCTTTCTGGCTACATTCCTGAGGAAATTGGAAAATTGTCTAACCTAAAGTATTTATGGCTTGGACATAATAACTTCAATGGTTCTCTTCCTCAAGAAATTGGGAAGTTACAGAGACTATTGGTTATACATCTTCAGGGAAATAAATTATCTGGCCATATTCCTGCTGGAATTTGGGAGTTGGTCAATGTGAAAGAATTGTGGCTTCAAGACAATAACTTTTCTGGTTTCATTCCTAAAGAGATTGGGAAGTTGGTCAATGTGGAAGAATTGATGCTTAAAGGCAATATTCTTTCTGGTTCCATTCCTAAAGAAATTGGGGAGTTGGTCAATGTGAAACAATTGGCGCTTCAAGACAATAATCTTTCTGGTTTCATTCCTAAAGAAATTGGGAAGTTGGTCAATGTGAAAGTATTGATGCTTCAAGACAATAATCTTTCCGGTTCCATTCCTAAAGAAATTGGAATGTTGACAACTATGTATATGCTTGATTTGTCCAGTAATTCTCTCTCTGGTACAATCCCCTCCACAATTGGAAACTTGAGCAATTTAGAATATCTTTACCTTTATAGCAACTATCTCACTGGTTCCATTCCCAATGAATTTGGAAAACTTCATTCTCTCTACACAATCCAATTGTTAGATAATAACCTCTCTGGATCAATCCCACCTTCCATAGGTAACTTGATCAATTTGGAATCCATTATCATACACCAAAATAGACTCTCTGGACCAATTCCTTCCACTATTGGAAATTTGACACGCCTCACTATATTATCTTTATTCTCAAATGAATTCAGTGGCAACATTCCAAGAGAGATGAACAAGCTTACCAATTTGGTAAACTTGCAATTATCTGATAACAATTTCACTGGTCAAGTGCCGCATAATATTTGCATGAGTGGAAAGTTGACACAATTTTCTGCCATGAATAACCATTTCACAAGCCTTTCAAAGAGTTTGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTGAACACAACCAACTGACTGGAAATATAACAGATGAGTTTGGTGTATATCCAAAGTTGGACTACATTGGATTGAGTGAAAATAATTTTTATGGCCACCTTTCACCAAATTGGGGAAAATGCTATAACCTCACAAGCCTCAAGATCTCCAATAATAATTTATCAGGTGGTATACCACCAAACCTAGGTGAGGCAACTGGCTTAAGGGTACTTGACTTATCTTCAAACCATCTTACAGGGAAAATTCCAAAGGACTTAGGTAAGTTGACTTCATTGATCCAACTCTTGATGAGTAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTGCAGGAACTTGATACCTTAGAGCTTGCATCAAATAATTTAAGTGGCTTCATCACAAAACAACTTGGAGGGCTACCTAAGTTATTGAACTTAAATTTGAGCCAAAACAAATTTGGGGGAAATATTCCAACTCAGTTTGGTGAATTCAAAGTTCTTCAAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAAAAATACCATCAATGCTTGGACAGTTGATCTACTTAATTACATTGAATATCTCACATAATAATCTTTCTGGTACCATTCCTTCCAGCTTCAATGGGATGTTCAGCTTGTCATCTGTTGATATTTCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATGCTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGTGAAACTCAAAATCATAAGAATAACAAAGTCTTAATGATAGTTTTACCCATTACAGTGGGCGCTCTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGTTGCAGAATCTCAAGCTCAAAATATATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATAATTGAAGCCACAAAAGAGTTTGATAATAAACATCTCATTGGGGTTGGAGGGCATGGAAGTGTTTACCAGGCAGAGTTGCACACTGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTACCAAGTGAAGAAATTTCCAATCTAAAAGCTTTCAGAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTGAAGTTATATGGATTTTGTTCACATTCACGGTTCTCATTTTTGGTTTATGAGTTCTTGGAGAAAGGTAGTGTGGACAAGATTTTGAAAGATGATGAACAAGCACTTGCATTTGATTGGAACAAGAGGATGAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCACCTCCTATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTAGAACATGTGGCTCATGTCTCAGACTTTGGAACTGCCAAGCATCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGAAAGCACCCTGGAGATGTAATATCTTCTTCCTTGCTATCATCTTCATGGACTGTAGTGAGTGATATTATGGCATTGATGGAGAAGTACTTGGACCAACGTCTCCCTCATCCCACAAAACCAATTGTTGATGAGTTGGTATCAATTGTAAGGATAACAATTGCTTGCTTGACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGTTTGTGATCTCAAAGTAA 3561 0.3766 MLQSMKLVPFWLLLVMCFCAFTVASSQHVTSTSKSVSSTFATFQSRQASALLKWKATFDKQSQALLSSWSGNSSCNWLGIMCDKSRSVSNINLTSIGLRGTLESLNFSSLPNILTLNISHNSLNGSIPPHIGVLSKLSHLDLSHNNLSGTIPYEITQLASLQILHLANNVLSGSIPREIGSLRNLREFSIDFANLTGTTIPISIWKLASLSYLSFWKCNLTGSIPISIGNLANLSYLDLTENNLSGYIPEEIGKLSNLKYLWLGHNNFNGSLPQEIGKLQRLLVIHLQGNKLSGHIPAGIWELVNVKELWLQDNNFSGFIPKEIGKLVNVEELMLKGNILSGSIPKEIGELVNVKQLALQDNNLSGFIPKEIGKLVNVKVLMLQDNNLSGSIPKEIGMLTTMYMLDLSSNSLSGTIPSTIGNLSNLEYLYLYSNYLTGSIPNEFGKLHSLYTIQLLDNNLSGSIPPSIGNLINLESIIIHQNRLSGPIPSTIGNLTRLTILSLFSNEFSGNIPREMNKLTNLVNLQLSDNNFTGQVPHNICMSGKLTQFSAMNNHFTSLSKSLKNCSSLIRVRLEHNQLTGNITDEFGVYPKLDYIGLSENNFYGHLSPNWGKCYNLTSLKISNNNLSGGIPPNLGEATGLRVLDLSSNHLTGKIPKDLGKLTSLIQLLMSSNHLSGNVPVQIASLQELDTLELASNNLSGFITKQLGGLPKLLNLNLSQNKFGGNIPTQFGEFKVLQSLDLSGNFLDGKIPSMLGQLIYLITLNISHNNLSGTIPSSFNGMFSLSSVDISYNQLEGPLPDIPAFHNAKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNKVLMIVLPITVGALILALVSFGVSKHLSQTSANEECQVAESQAQNIFAIWSFDGKMVYENIIEATKEFDNKHLIGVGGHGSVYQAELHTGQVVAVKKLHSVPSEEISNLKAFRSEIQALTEIRHRNIVKLYGFCSHSRFSFLVYEFLEKGSVDKILKDDEQALAFDWNKRMNAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEHVAHVSDFGTAKHLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTVVSDIMALMEKYLDQRLPHPTKPIVDELVSIVRITIACLTESPRSRPTMEQVAKEFVISK. 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01697 1186 SMART LRR_typ_2 519 543 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 375 399 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 231 254 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 255 279 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 303 327 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 134 157 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 423 446 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 734 758 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 158 182 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 471 495 IPR003591 -
Seca2g01697 1186 SMART LRR_typ_2 639 662 IPR003591 -
Seca2g01697 1186 Gene3D Phosphorylase Kinase; domain 1 869 988 - -
Seca2g01697 1186 FunFam Leucine-rich repeat receptor protein kinase MSP1 873 988 - -
Seca2g01697 1186 FunFam Leucine-rich receptor-like protein kinase family protein 201 298 - -
Seca2g01697 1186 Gene3D Transferase(Phosphotransferase) domain 1 989 1185 - -
Seca2g01697 1186 FunFam Piriformospora indica-insensitive protein 2 441 538 - -
Seca2g01697 1186 PRINTS Leucine-rich repeat signature 231 244 - -
Seca2g01697 1186 PRINTS Leucine-rich repeat signature 137 150 - -
Seca2g01697 1186 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1034 1046 IPR008266 GO:0004672|GO:0006468
Seca2g01697 1186 ProSitePatterns Protein kinases ATP-binding region signature. 916 939 IPR017441 GO:0005524
Seca2g01697 1186 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 346 440 - -
Seca2g01697 1186 SUPERFAMILY RNI-like 285 603 - -
Seca2g01697 1186 Pfam Leucine rich repeat 737 795 IPR001611 GO:0005515
Seca2g01697 1186 Pfam Leucine rich repeat 616 675 IPR001611 GO:0005515
Seca2g01697 1186 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Seca2g01697 1186 Pfam Leucine rich repeat 402 460 IPR001611 GO:0005515
Seca2g01697 1186 FunFam Uncharacterized protein 541 838 - -
Seca2g01697 1186 Gene3D Ribonuclease Inhibitor 44 198 IPR032675 -
Seca2g01697 1186 Gene3D Ribonuclease Inhibitor 199 296 IPR032675 -
Seca2g01697 1186 Gene3D Ribonuclease Inhibitor 394 542 IPR032675 -
Seca2g01697 1186 Gene3D Ribonuclease Inhibitor 543 838 IPR032675 -
Seca2g01697 1186 ProSiteProfiles Protein kinase domain profile. 910 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01697 1186 SUPERFAMILY L domain-like 74 392 - -
Seca2g01697 1186 ProSiteProfiles Leucine-rich repeat profile. 640 663 IPR001611 GO:0005515
Seca2g01697 1186 Gene3D Ribonuclease Inhibitor 297 393 IPR032675 -
Seca2g01697 1186 SUPERFAMILY L domain-like 562 821 - -
Seca2g01697 1186 Pfam Protein kinase domain 911 1180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01697 1186 Pfam Leucine rich repeat N-terminal domain 46 83 IPR013210 -
Seca2g01697 1186 FunFam MDIS1-interacting receptor like kinase 2 989 1186 - -
Seca2g01697 1186 PANTHER LEUCINE RICH REPEAT KINASE 2 457 1184 - -
Seca2g01697 1186 SUPERFAMILY Protein kinase-like (PK-like) 893 1180 IPR011009 -
Seca2g01697 1186 FunFam Nuclear pore complex protein NUP107 44 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01697 Seca-Chr2 31556109 31560255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01697 29 634 Receptor kinase-like Gene Family AT4G08850 36.063 2.33e-103 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g01697 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01697 - - gmx:100808316 1347.41