Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01695 ATGGCATTCATATATCAGATGCTTCAATCCATGAAATGGATACCCTTTTGGCTGCTACTTGTAATGTGCTTTTGTGCATTCACAGTGGCATCTTCTCAACATGTTACAAGTACTTCCAAAAGTGTTTCATCTACTTTTGCCACATTTCAAAGTAGAGAAGCAAGTGCTCTGTTAAAGTGGAAAGCCACCTTTGACAAGCAAAGCCAGGCTTTGCTATCTTCATGGAGCGGTAATAGTTCATGCAATTGGCTGGGAATTATGTGTGACAAGTCCAGATCTGTTTCCAACATAAACCTTACATCTATTGGACTAAGAGGTACGCTTGAAAGTCTCAATTTCTCATCACTTCCAAACATCCTCTTTCTAAATACAAGTCACAACTCCTTGAATGGAGTTATTCCTCCCCACATTGGGGTGTTGTCTAAACTCACCCATCTTGATCTTAGTCACAATAATCTTTCTGGAACAATTCCATATGAGATAACACAATTAGCCAGCCTTCAAATTTTACATTTGGCTAATAATGTTCTCTCTGGTTCCATTCCTAGAGAAATAGGTATACTAAGGAATTTGAGAGAGTTTAGTATTGATTTTGCCAATCTCACAGGAACAACTATCCCAATTTCTATATGGAAACTAGCTTCTTTGTCATATCTTTCTTTCTGGAAGTGCAATCTCACAGGGTCTATCCCAATTTCTATAGGAAATTTGGCCAACTTGTCATATCTAGATTTAACAGAGAACAATCTTTCTGGTTACATTCCTAAGGAAATTGGAAAATTGTCTAACCTAAAGTATTTATGGCTTGGACATAATAACTTCAATGGTTCTCTTCCTCAAGAAATTGGGAAGTTACAGAGCCTATTGGTTATACATCTTCAGGGAAATAAATTATCTGGCCATATTCCTGCTGGAACTTGGGAGTTGGTCAATGTGAAAGAATTGTGGCTTCAAGACAATAACTTTTCTGGTTTCATTCCTAAAGAGATTGGGAAGTTAGTCAATGTGGAAGAATTGATGCTTACAGGCAATAATCTTTCTGGTTCAATTCCTAAAGAAATTGGGGAGTTGGTCAATGTGAAACAATTGTTACTTCAAGACAATATTCTCTCTGGTTTCATTCCTAAAGAAATTGGAATGTTGACAACTATGTATATGCTTGATTTGTCCATTAATTCTCTCTCTGGTAAAATTCCCCCTTCAATTGGAAACTTGAGCAATTTAGTATATCTTTACCTTTATGGCAACCATCTCACTGGTCCCATTCCCAAAGAAGTTGGAAAACTCTTTCTTCTTTCAACAATCCAATTTAATGATAACAACCTTTCTGGACCAATTCCTTCCACAATTGGAAATTTGACAAAAATCAATTCAATTTTTTTAACATCAAATGGACTCAGTGGCATCATTCCTGATGAAATGAAATGGTTAACCAATTTGGATAATTTGCAGCTATCTCATAATAATTTCATAGGTCAATTGCCTCACAACATTTGCACTGGTGGAAAGTTGACCAAGTTTGCTGCTATGAATAACCACTTAACAGGTGTAGGTCCAAAGAGTTTGAAGAACTGCTCTAGTCTTGTAAGAGTCAGGCTTGAACAAAATCAGCTGTCTGGAAATATAACAGATGATTTTGGTGTATATCCAAATTTGGATTACATGGGATTGAGTGAAAACAAATTTTATGGCCACCTTTCACCAAATTGGGGAAAGTGCTACAACTTGACAAGCCTCAATATCTCTAACAATAATTTATCAGGTGGTATACCACCAGAGCTAGGCAAGGCAACCAACTTACATGTACTTGACTTGTCTTCAAACCATCTTACAGGGAAAATTCCAAATGAACTTGGCAACTTGACTAAGTTGAACAAACTCATGTTAAGCAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTACATGATCTGGAAACCTTGGAGCTTGCAGCAAATAATTTAAGTGGTTTCATCACAACACAACTTGCAGGGTTACCTAAGTTGTGGAACTTGAATTTGAGCCAAAATAAATTCAAGGGGAAAATACCTATTGAGTTTGGCCAATTCAAAGCTCTTCAAATTCTTGACCTCAGTGGGAATCTTTTGGGTGGAACAATACCATCTATGTTCTCACAGTTGAAATACATAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTCTAGCTTTAAACAAATGTTAAGCTTGTCTTATGTCGATATATCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATGCTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGTGAAACTCAAAATCATAAGAATAACAAAGTCTTATTGATAGTTTTACCCATTACAGTGGGCGCTTTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGTTGCAGAATCAAAAGCTGAAAATCTATTTGCTATATGGAGTTTTGATGGCAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAATATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAGAGCAAAGTTGCATACAGGACAAGTTGTTGCTGTGAAGAAACTTCATTCAACACCAAATGGATTAGAAAGGTCCAATCTAAAAGCTTTCAGAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTCAAGTTATATGGATTTTGTTTGCATTCACAGTACTCATTTTTGGTTTGTGATTTATTGGAGAGAGGTAGTGTGGAGGAGATTTTGAAAGATGATCAACAAGCAATTGCATTTGATTGGAACAAGAGGATGAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCACCTCCTATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTAGAACATGTGGCTCATGTCTCAGACTTTGGAACTGCCAAGCATCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGAAAGCACCCTGGAGATGTAATATCTTCTTCCTTGCTATCATCTTCATGGACTGTAGTGAGTGATATTATGGCATTGATGGAGAAGTACTTGGACCAACGTCTCCCTCATCCCACAAAACCAATTGTTGATGAGTTGGTATCAATTGTAAGGATAACAATTGCTTGCTTGACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGTTTGTGATCTCAAAGTAA 3441 0.3737 MAFIYQMLQSMKWIPFWLLLVMCFCAFTVASSQHVTSTSKSVSSTFATFQSREASALLKWKATFDKQSQALLSSWSGNSSCNWLGIMCDKSRSVSNINLTSIGLRGTLESLNFSSLPNILFLNTSHNSLNGVIPPHIGVLSKLTHLDLSHNNLSGTIPYEITQLASLQILHLANNVLSGSIPREIGILRNLREFSIDFANLTGTTIPISIWKLASLSYLSFWKCNLTGSIPISIGNLANLSYLDLTENNLSGYIPKEIGKLSNLKYLWLGHNNFNGSLPQEIGKLQSLLVIHLQGNKLSGHIPAGTWELVNVKELWLQDNNFSGFIPKEIGKLVNVEELMLTGNNLSGSIPKEIGELVNVKQLLLQDNILSGFIPKEIGMLTTMYMLDLSINSLSGKIPPSIGNLSNLVYLYLYGNHLTGPIPKEVGKLFLLSTIQFNDNNLSGPIPSTIGNLTKINSIFLTSNGLSGIIPDEMKWLTNLDNLQLSHNNFIGQLPHNICTGGKLTKFAAMNNHLTGVGPKSLKNCSSLVRVRLEQNQLSGNITDDFGVYPNLDYMGLSENKFYGHLSPNWGKCYNLTSLNISNNNLSGGIPPELGKATNLHVLDLSSNHLTGKIPNELGNLTKLNKLMLSSNHLSGNVPVQIASLHDLETLELAANNLSGFITTQLAGLPKLWNLNLSQNKFKGKIPIEFGQFKALQILDLSGNLLGGTIPSMFSQLKYIETLNLSHNNLSGVIPSSFKQMLSLSYVDISYNQLEGPLPDIPAFHNAKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNKVLLIVLPITVGALILALVSFGVSKHLSQTSANEECQVAESKAENLFAIWSFDGKMVYENIIEATEEFDNKYLIGVGGQGSVYRAKLHTGQVVAVKKLHSTPNGLERSNLKAFRSEIQALTEIRHRNIVKLYGFCLHSQYSFLVCDLLERGSVEEILKDDQQAIAFDWNKRMNAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEHVAHVSDFGTAKHLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTVVSDIMALMEKYLDQRLPHPTKPIVDELVSIVRITIACLTESPRSRPTMEQVAKEFVISK. 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01695 1146 ProSitePatterns Tyrosine protein kinases specific active-site signature. 994 1006 IPR008266 GO:0004672|GO:0006468
Seca2g01695 1146 SUPERFAMILY L domain-like 80 395 - -
Seca2g01695 1146 SMART LRR_typ_2 285 309 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 333 357 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 717 740 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 477 501 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 693 716 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 405 429 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 573 597 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 140 163 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 164 188 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 621 645 IPR003591 -
Seca2g01695 1146 SMART LRR_typ_2 237 261 IPR003591 -
Seca2g01695 1146 FunFam MDIS1-interacting receptor like kinase 2 isoform A 398 498 - -
Seca2g01695 1146 FunFam MDIS1-interacting receptor like kinase 2 949 1146 - -
Seca2g01695 1146 FunFam Nuclear pore complex protein NUP107 50 207 - -
Seca2g01695 1146 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 393 1143 - -
Seca2g01695 1146 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Seca2g01695 1146 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 306 397 - -
Seca2g01695 1146 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Seca2g01695 1146 Pfam Leucine rich repeat 575 634 IPR001611 GO:0005515
Seca2g01695 1146 Pfam Leucine rich repeat 695 754 IPR001611 GO:0005515
Seca2g01695 1146 Gene3D Ribonuclease Inhibitor 499 797 IPR032675 -
Seca2g01695 1146 PRINTS Leucine-rich repeat signature 143 156 - -
Seca2g01695 1146 PRINTS Leucine-rich repeat signature 717 730 - -
Seca2g01695 1146 Pfam Leucine rich repeat N-terminal domain 52 89 IPR013210 -
Seca2g01695 1146 FunFam Uncharacterized protein 499 797 - -
Seca2g01695 1146 FunFam Leucine-rich repeat receptor protein kinase MSP1 832 948 - -
Seca2g01695 1146 ProSiteProfiles Protein kinase domain profile. 869 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01695 1146 Gene3D Transferase(Phosphotransferase) domain 1 949 1145 - -
Seca2g01695 1146 Gene3D Ribonuclease Inhibitor 385 498 IPR032675 -
Seca2g01695 1146 ProSiteProfiles Leucine-rich repeat profile. 599 622 IPR001611 GO:0005515
Seca2g01695 1146 FunFam Leucine-rich receptor-like protein kinase family protein 208 304 - -
Seca2g01695 1146 SUPERFAMILY L domain-like 507 780 - -
Seca2g01695 1146 SUPERFAMILY L domain-like 380 491 - -
Seca2g01695 1146 Pfam Protein kinase domain 871 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01695 1146 Gene3D Phosphorylase Kinase; domain 1 828 947 - -
Seca2g01695 1146 SUPERFAMILY Protein kinase-like (PK-like) 854 1140 IPR011009 -
Seca2g01695 1146 Gene3D Ribonuclease Inhibitor 307 381 IPR032675 -
Seca2g01695 1146 Gene3D Ribonuclease Inhibitor 50 205 IPR032675 -
Seca2g01695 1146 Gene3D Ribonuclease Inhibitor 206 306 IPR032675 -
Seca2g01695 1146 SMART LRR_sd22_2 309 338 - -
Seca2g01695 1146 SMART LRR_sd22_2 453 482 - -
Seca2g01695 1146 SMART LRR_sd22_2 693 722 - -
Seca2g01695 1146 SMART LRR_sd22_2 261 276 - -
Seca2g01695 1146 SMART LRR_sd22_2 645 671 - -
Seca2g01695 1146 SMART LRR_sd22_2 405 426 - -
Seca2g01695 1146 SMART LRR_sd22_2 140 163 - -
Seca2g01695 1146 Pfam Leucine Rich Repeat 142 158 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01695 Seca-Chr2 31504711 31508768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01695 35 687 Receptor kinase-like Gene Family AT4G08850 36.778 2.46e-106 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g01695 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01695 - - gmx:100811066 1354.73