Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01660 ATGATAGTTGCTATGGACTTGAATGCCTCCCCGGTGCCGGAGGAAGATGAAGATGCTTTTGAGGGCCCGGTGGAAGAGTATAATACACCAGAAGAACGCAAAGAATCTGCAATTGATATAGCACGCCGGGAACGTGAAGAAAGAAAGAACCGGTTGAAGAGAGAACGTTCAGATGACAGACCTGTGCAAGTATCACAGTTGCCTGGACATGATCAGCAACTCCATACTAAGCGACTTAAATCATATGATATAAGTAAGCTTCCTCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCTAAAGTTCCACTTGGTGAATCATTCAATGAATATATTGTTCCTGGAAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACTTCTCGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTAAAGATTCAGTGCAAGGGCCGCGGTTCTGTACCTGGCAATTTATCTGTCAATCAATTTGTCTATGAGGTTGCACAATTTCTATCACGTCAAAAACACTCAAAGAAGTATATGCTTGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCACTATCTAATGCGCACAATGTCAATGTCTGTTACCCAGGCAATAAAAATATTTTCTGATGCACGCCCTCCTGGAATCTATAAGCCGGAGTATATTAATTCATTATACACATTTTATCATGAAAAAAAGCCTGAAATGGTAGTTTGTCCTCGTACTCCTGAATGGAAGAGGACTCCTCCTGAACTTGTTGATCTCAATGGTGATGCAGTTCCAAATGATGATGATGATGATGATGATGATGACAACCATGAGACTGACACAATGACAAATGATGATGTTTTGGGTGATGAGATACCTAATGATCAGCAAGTTGCATTTCGACAGTTCTGCTTTCAAACACTCAAACTGGGTGTTGGGGCCAGAGGACACATGCAATTTCCAGGATCACACCCTGTTTCTTTAAGCAGGGATAATTTACAGCTGTTACGACAACGTTATTATTATGCAACGTGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGTTACTTGATTGATAGATCCTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGTTACAAATGATGGGTTGATGGAAAAGACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATATGATGGCAGTCAATCACGTATCAGTAATAGAGCGACCTTTCTATGAACGGTGGAGGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGATTCCAGAGCAAAAATCTTTACTATAGATATGACATGGAGCCATTCAGGGTGAGGAGGAAAGCTTTTTGGTTGCTCTCTACTGTCACAAAACTCTTAAACGAATTCATTCCAAAACTCTCACATGATGCAGATGGCCTCATATTTCAGATGTTATTGAAGTCGATGGAGGTTGTTATTGATGATGTTTATAAACAGGGTTGGGACGATCCTTATATACCACGCACTCATGAAGGCCTCTTAAAATGGAAATATGCTGATCTGAACTCAGTTGATTTTCTCTTTGAGGTATCATCAAATGATCGTCAGCTACTTTTTCTCTATGAGCGAGGAAAAAAGAAACTCATGGAAGGGTATAGGGTTGCATTTGAAGAAGGTTCAGACCCCTTGCTTTATTCCGGAAAGATCATTGAGTGTGCTTGGGATTCTGATAAACAAGAATGGATATTCAAGCGAGTCAGAACAGATAAGTCAACTCCAAATGACTTTAATACTTATAAGAAGGTGATGAAAAGTATAAGGGACAATATCACCGAGGATATCCTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATCGATAGCAAAGCCCATCATCACACTAACATGGCTAGGCGAAGGTGA 2079 0.3973 MIVAMDLNASPVPEEDEDAFEGPVEEYNTPEERKESAIDIARREREERKNRLKRERSDDRPVQVSQLPGHDQQLHTKRLKSYDISKLPPGWLDCPSFGQEIFCMIPSKVPLGESFNEYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPGNLSVNQFVYEVAQFLSRQKHSKKYMLVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYINSLYTFYHEKKPEMVVCPRTPEWKRTPPELVDLNGDAVPNDDDDDDDDDNHETDTMTNDDVLGDEIPNDQQVAFRQFCFQTLKLGVGARGHMQFPGSHPVSLSRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRVTNDGLMEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDMMAVNHVSVIERPFYERWRMLEKEVIEPRNQERFQSKNLYYRYDMEPFRVRRKAFWLLSTVTKLLNEFIPKLSHDADGLIFQMLLKSMEVVIDDVYKQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEVSSNDRQLLFLYERGKKKLMEGYRVAFEEGSDPLLYSGKIIECAWDSDKQEWIFKRVRTDKSTPNDFNTYKKVMKSIRDNITEDILLNEINEIIRLPMYADRIRIDSKAHHHTNMARRR. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01660 692 FunFam mRNA-capping enzyme 584 677 - -
Seca2g01660 692 CDD Adenylation_mRNA_capping 338 562 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca2g01660 692 SUPERFAMILY Nucleic acid-binding proteins 564 676 IPR012340 -
Seca2g01660 692 Gene3D - 600 669 IPR012340 -
Seca2g01660 692 FunFam mRNA capping enzyme, putative 309 559 - -
Seca2g01660 692 MobiDBLite consensus disorder prediction 278 315 - -
Seca2g01660 692 MobiDBLite consensus disorder prediction 11 25 - -
Seca2g01660 692 Pfam mRNA capping enzyme, catalytic domain 350 561 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca2g01660 692 Gene3D Protein tyrosine phosphatase superfamily 83 304 IPR029021 -
Seca2g01660 692 MobiDBLite consensus disorder prediction 26 61 - -
Seca2g01660 692 PIRSF mRNA_capping_HCE 73 692 IPR017074 GO:0004484|GO:0006370|GO:0140818
Seca2g01660 692 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Seca2g01660 692 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Seca2g01660 692 Pfam mRNA capping enzyme, C-terminal domain 566 659 IPR013846 -
Seca2g01660 692 MobiDBLite consensus disorder prediction 288 306 - -
Seca2g01660 692 MobiDBLite consensus disorder prediction 1 71 - -
Seca2g01660 692 Gene3D DNA ligase/mRNA capping enzyme 305 561 - -
Seca2g01660 692 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Seca2g01660 692 SMART dsp_5 146 261 IPR020422 GO:0006470|GO:0008138
Seca2g01660 692 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Seca2g01660 692 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 319 562 - -
Seca2g01660 692 PANTHER MRNA-CAPPING ENZYME 82 674 - -
Seca2g01660 692 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Seca2g01660 692 FunFam mRNA capping enzyme family protein 83 301 - -
Seca2g01660 692 Coils Coil 38 58 - -
Seca2g01660 692 CDD RNA_5'-triphosphatase 90 256 - -
Seca2g01660 692 ProSiteProfiles ATP-dependent DNA ligase family profile. 432 590 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01660 Seca-Chr2 30490527 30505307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01660 1 692 Protein tyrosine phosphatase (PTP) family AT3G09100 64.387 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01660 K13917 - gmx:100803597 1196.42