Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01636 ATGATGAATAGGGGAATTGAAGTTCTCTCTCCAGCCTCCTATCTCCAGAATTCCAATTGGTTGTTCCAGGAAAGCAAAGGAGCCAAATGGACTCCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTATTATGATAAGGACACCCCAGATCGATGGGTGAGGGTGGCAGCAATGATTCCTGGCAAAACTGTAGGTGATGTGATCAAACAGTACAGAGAACTTGAAGAAGATGTGTGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGGTATAGTACTAGTTCTTTCACATTGGAGTGGGTTAATAATCAAGGCCATGATGGGTTCAAGCAATTTTATAGTGTTGGTGGGAAAAGGGGTGCATCAACTCGACCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCATAGGCAATTTTTGCTTGGTCTCAAGAAATATGGTAAAGGGGACTGGAGAAACATCTCTAAGAATTTTGTAACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATCAGGCAACTCACAGGAGGAAAGGATAAGAGGAGATCCAGTATCCATGACATCACAATGGTTAATCTCCCAGAAACAAAATCTCCTTCATTAGACAGTAACAAACTTTCACCAGATGATTCATTGAAGTTTGCAAATCCACAACAGAATCAGAAGTTGTCTAACATGGTTAAACAGGAATATGACTGGAAATTCCCAGATGAGGGCATGCCAATTGTTTTCAATTCAACAAAGGGAAACATGTTCATGGCACCATTGAGTGGGATTTCTTCATATGAATCTAAACCACAGGAGCTTAATTTACTCAGAGGCACTCTCCATGGATGCCAGTTTTCACCTTATGATACTGTTTTCCAAATGCAATGA 909 0.418 MMNRGIEVLSPASYLQNSNWLFQESKGAKWTPEENKLFENALAYYDKDTPDRWVRVAAMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYSTSSFTLEWVNNQGHDGFKQFYSVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISKNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPETKSPSLDSNKLSPDDSLKFANPQQNQKLSNMVKQEYDWKFPDEGMPIVFNSTKGNMFMAPLSGISSYESKPQELNLLRGTLHGCQFSPYDTVFQMQ. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01636 302 MobiDBLite consensus disorder prediction 118 137 - -
Seca2g01636 302 Gene3D - 135 185 - -
Seca2g01636 302 ProSiteProfiles Myb-like domain profile. 22 76 IPR001005 -
Seca2g01636 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Seca2g01636 302 SMART sant 133 183 IPR001005 -
Seca2g01636 302 SMART sant 26 78 IPR001005 -
Seca2g01636 302 FunFam Transcription factor SRM1 22 89 - -
Seca2g01636 302 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Seca2g01636 302 Gene3D - 22 89 - -
Seca2g01636 302 CDD SANT 29 75 IPR001005 -
Seca2g01636 302 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Seca2g01636 302 SUPERFAMILY Homeodomain-like 29 83 IPR009057 -
Seca2g01636 302 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Seca2g01636 302 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Seca2g01636 302 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Seca2g01636 302 CDD SANT 136 181 IPR001005 -
Seca2g01636 302 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 236 IPR043363 -
Seca2g01636 302 FunFam transcription factor MYB1R1 135 186 - -
Seca2g01636 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01636 Seca-Chr2 29711463 29712729 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g01636 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01636 - - var:108329798 503.056