Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01627 ATGGAGGGGAAAGATGAAGATGTGAGAGTTGGAGCCAACAGGTACACGGAGAAGCAACCAATAGGAACAGCTGCTCAAACCCAAGATAGCAAAGACTACAAAGAGCCACCTTCAGCTCCATTGTTTGAGGCTGGAGAGTTAACATCATGGTCTTTCTACAGAGCAGGCATAGCAGAGTTTGTGGCCACATTCTTGTTTCTTTATATCACAGTTTTGACTGTGATGGGTGTGGCCAAATCTCCCAGCAAGTGTTCCACTGTTGGTGTTCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACAGCTGGTATCTCAGGTAAGGAAAATGCAACATACCCAAAATTTCATTTATTATTACTACTCCCTCTCTTTGCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGTTGTTTTTGGCACGCAAGTTATCTATGACTAGGGCAGTGTTTTACATAATTATGCAGTGCTTGGGAGCTATATGTGGTGCTGCTGTTGTTAAGGGATACCAATCAAACCAATTTGAGAGGCTTGGAGGTGGTGCCAACACTGTCAATAAAGGATACTCCAAAGGTGCTGGCCTTGGAACAGAGATTGTTGGCACATTTGTTCTTGTTTATACTGTCTTCTCTGCTACAGATGCTAAGAGAAATGCTAGAGACTCACACGTTCCAATTTTGGCACCACTGCCTATTGGTCTTGCTGTCTTCCTGGTGCATTTAGCTACAATTCCTGTCACAGGGACTGGAATCAACCCAGCTAGAAGTTTAGGTGCAGCTCTTGTATACAACAAGGATCAAGCTTGGGATGATCATTGGATCTTTTGGGTTGGCCCTTTCATTGGGGCAGCACTTGCAGCTTGGTATCATCAGATAGTGATAAGAGCCATCCCATTCAAGTCTAAGTGA 924 0.4437 MEGKDEDVRVGANRYTEKQPIGTAAQTQDSKDYKEPPSAPLFEAGELTSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSPSKCSTVGVQGIAWSFGGMIFALVYCTAGISGKENATYPKFHLLLLLPLFAGGHINPAVTFGLFLARKLSMTRAVFYIIMQCLGAICGAAVVKGYQSNQFERLGGGANTVNKGYSKGAGLGTEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGLAVFLVHLATIPVTGTGINPARSLGAALVYNKDQAWDDHWIFWVGPFIGAALAAWYHQIVIRAIPFKSK. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01627 307 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Seca2g01627 307 Gene3D Glycerol uptake facilitator protein. 39 306 IPR023271 -
Seca2g01627 307 MobiDBLite consensus disorder prediction 19 33 - -
Seca2g01627 307 SUPERFAMILY Aquaporin-like 46 300 IPR023271 -
Seca2g01627 307 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 303 IPR034294 -
Seca2g01627 307 CDD MIP 54 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 202 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 FunFam Putative aquaporin PIP-type 7a 172 303 - -
Seca2g01627 307 Pfam Major intrinsic protein 131 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 Pfam Major intrinsic protein 46 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 NCBIfam MIP family channel protein 131 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g01627 307 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01627 Seca-Chr2 29307567 29309955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01627 1 307 Major Intrinsic Protein MIP AT4G23400 77.850 6.92e-170 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01627 K09872 - cave:132192212 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10742 4 244417405 244418268 Seca2g01627 2 29307567 29309955 PCT