Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01617 ATGGTCTCAAGCTTGTGCTCAGCAGCAACAGCAACCCCATCAGGAAATGAAACTGATCTTCATGCTTTACTTGACTTCAAGAGTAGGATAGTTAAAGATCCATTCCAAATGATGAGTTTTTGGAATGACTCCATCCATCACTGCAACTGGATAGGAATCACTTGCAACATCTCTAATGGAAGGGTCATGCAATTGAGCCTTGAACAACTGAGATTAGCAGGCACTCTTACACCTTCCATAGGAAACCTCACATTCCTCACCACACTCAACTTGCTAAACAATAGCTTCCATGGTGAACTTCCTCAAGAGTTGGGTCGTTTACTATACTTGCAACATCTAAATATCAGCCTCAATAACTTTGGTGGGAGTATTCCAAGTAATCTAAGTCACTGTACAGAACTAAGAGTACTGGCTGCTGGTGCTAACAATCTTAAAGGAACAATCCCAACTTGGATTGGAAATCTTTCTTCTTTGTCTAGAATTAGCTTTGGCTTGAACAATTTGCATGGAAGAATACTACAAGAGGTAGGTCGTTTATCAAGCTTGACATATTTTGTGCTATATGGGAATTATTTGTCTGGCACAGTTCCTTCAACAATCTATAACATTTCTTCCTTATACTATTTTACTCTTACTCAAAACCATCTCCATGGAAACTTACCAGCTGATGTTGGATTTACTCTTCCTAATCTTGAAGTATTTGCTGGTGGGGTCAACAATTTCACAGGGACTGTTCCTGCATCATTGTTAAATGCATCAAAACTTGAAGTTCTTGACTTTTCTCTTAATGGTCCCACTGGAACACTGCCTAAGAACATATGGGTCTTGCACCAGTTAACTAGACTTAGCTTTGAGCACAATAGACTTGGAACTGGGAAAACAGAAGATCTAAGCTTTCTTGATTCTTTGGTCAATTGCACTGCTCTACAAGTTCCACGTCTAGGTGGAAATAATTTTGGTGGAAAGTTTCCCAACTCAGTTGCTAATTTCTCAACCCAATTGCATACATTAGCCATTAATTCCAACGGAATTCTAGGAAATATACCTGTTGGGATTGGCAATCTTGCTAGCCTTGCCCTTCTAGGATTGGAAGGAAACCACTTAACTGGTAGCATTCCTGATACACTAGGTAAGCTGCAGAATCTACAAGAAGTGTATCTTAATACCAACAAACTTTCAGGAAGAATTCCATCCTCCTTAGGAAATTTAACTTCATTAACAAAACTCCTTCTGGAGGGGAACAACTTTGAAGGAAGCATACCTTCTAGTCTTGGAAATTGTCAGAAGCTATTGGTACTTAGCCTTTATAGTAACAAGCTTAGTGGCACCATACCAAAAGAAGTCATTAGCCTTTCTTCACTAGCAATATACTTGGATGTGTCTCATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTAGTTGCATTGCAGGGAAACTCTTTCCAGGGAAACATTCCTCAAACTTTGAATAATTTGAGAGGTTTACAAGATATAGATCTTTCACGCAATAACCTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCACAGAGCTCAAGCATCTCAACCTTTCTTACAATAATTTTGAAGGTGAAATACCAAAGAATGGAATCTTCAAGAATGCAACTTCCATTTCATTATATGGAAACAGCAAGCTATGTGGTGGTGTCCCAGAATTGAAATTTCCTGCATGCACTGTCATGAAAGCATCTTTGTTAACAAAACTTCTTGCTCCCAAGGTGGCTATTCCTATAGCTATTGCACTGAGGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATAATCAAGGTAATGACTTCAAAGCTCTAGTATTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATATGCAATATCAGGTCAAGACATTGACATTTATCCAAAGATTGAACATTGCAATCGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTAATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATATGGTTGCCCATGTTGGTGACTTCGGGTATGTTTCTTATTCCAACAGTACTAAAATGTTGGTTACATTTAAGAAAAATGACCCACTTAATAGAAGAAATGCAGAGTATGGCATGGGCGGCAAGCCTTCTACACTTGGAGATATCTACAGTTATGGGATACTATTACTGGAGATTTTCACAGGAAAAAGACCAACAGATGAAACATTTGAATGTGGCATGGGAATTCGCTAG 2319 0.3894 MVSSLCSAATATPSGNETDLHALLDFKSRIVKDPFQMMSFWNDSIHHCNWIGITCNISNGRVMQLSLEQLRLAGTLTPSIGNLTFLTTLNLLNNSFHGELPQELGRLLYLQHLNISLNNFGGSIPSNLSHCTELRVLAAGANNLKGTIPTWIGNLSSLSRISFGLNNLHGRILQEVGRLSSLTYFVLYGNYLSGTVPSTIYNISSLYYFTLTQNHLHGNLPADVGFTLPNLEVFAGGVNNFTGTVPASLLNASKLEVLDFSLNGPTGTLPKNIWVLHQLTRLSFEHNRLGTGKTEDLSFLDSLVNCTALQVPRLGGNNFGGKFPNSVANFSTQLHTLAINSNGILGNIPVGIGNLASLALLGLEGNHLTGSIPDTLGKLQNLQEVYLNTNKLSGRIPSSLGNLTSLTKLLLEGNNFEGSIPSSLGNCQKLLVLSLYSNKLSGTIPKEVISLSSLAIYLDVSHNALSGTLPAEVVALQGNSFQGNIPQTLNNLRGLQDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSISLYGNSKLCGGVPELKFPACTVMKASLLTKLLAPKVAIPIAIALRSFIDECQVLRSIRHRNLLKIITAISSVDNQGNDFKALVFEFMSNGSLEDWLHPINNMQYQVKTLTFIQRLNIAIDVACALEYLHHFCETPIVNCDIKPSNVLLDNDMVAHVGDFGYVSYSNSTKMLVTFKKNDPLNRRNAEYGMGGKPSTLGDIYSYGILLLEIFTGKRPTDETFECGMGIR. 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01617 772 Pfam Leucine rich repeat N-terminal domain 17 56 IPR013210 -
Seca2g01617 772 Gene3D Phosphorylase Kinase; domain 1 566 635 - -
Seca2g01617 772 Pfam Leucine rich repeat 357 416 IPR001611 GO:0005515
Seca2g01617 772 Pfam Leucine rich repeat 474 529 IPR001611 GO:0005515
Seca2g01617 772 SUPERFAMILY Protein kinase-like (PK-like) 588 764 IPR011009 -
Seca2g01617 772 Gene3D Ribonuclease Inhibitor 299 565 IPR032675 -
Seca2g01617 772 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 302 477 - -
Seca2g01617 772 SUPERFAMILY RNI-like 227 556 - -
Seca2g01617 772 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 173 269 - -
Seca2g01617 772 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 16 171 - -
Seca2g01617 772 Pfam Protein tyrosine and serine/threonine kinase 590 763 IPR001245 GO:0004672|GO:0006468
Seca2g01617 772 ProSiteProfiles Protein kinase domain profile. 471 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01617 772 Gene3D Ribonuclease Inhibitor 131 225 IPR032675 -
Seca2g01617 772 Gene3D Transferase(Phosphotransferase) domain 1 636 770 - -
Seca2g01617 772 Gene3D Ribonuclease Inhibitor 226 298 IPR032675 -
Seca2g01617 772 Gene3D Ribonuclease Inhibitor 18 130 IPR032675 -
Seca2g01617 772 SUPERFAMILY L domain-like 16 318 - -
Seca2g01617 772 SMART serkin_6 566 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01617 772 PANTHER OS04G0122200 PROTEIN 50 175 - -
Seca2g01617 772 SMART LRR_typ_2 451 476 IPR003591 -
Seca2g01617 772 SMART LRR_typ_2 516 541 IPR003591 -
Seca2g01617 772 SMART LRR_typ_2 403 427 IPR003591 -
Seca2g01617 772 SMART LRR_typ_2 355 378 IPR003591 -
Seca2g01617 772 SMART LRR_typ_2 379 402 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01617 Seca-Chr2 28754731 28757495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01617 588 765 Receptor kinase-like Gene Family AT5G20480 50.000 1.59e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca2g01617 PK_Tyr_Ser-Thr 7.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01617 - - vum:124827064 860.136