Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01616 ATGAACAATTCTTGTGTAAACTCCAATAAAATTGTATTCCAATTCCTTTGTGGATTTCTTCTCTTATGCATGAGTACATGCAAGGACTCTGCAACAGCATCAACCCTGCAAGAAAATGAAACTGATCTACATGCTTTACTTGACTTCAAGAGTAGGATAGTTCAAGATCCATTCCAAATCATGAGTTTATGGAATGATTCCATCCACCACTGCAACTGGGAAGGAGTTACCTGCAACATCTCCAATGGAAGGGTCATTTATTTGATCCTTGAAGACCTTACCTTGGCAGGTACTGTTCCACCATCTATAGGAAATCTTACATTCCTCACCAGACTCAACCTTAGGAATAGTAGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGATATTTACTATACCTACAACATCTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCACTGCACAAAACTAAGTGTATTATCTGCTGGTCATAACAAGTTCACAGGAACAATTCCAGCATGGATAGGAAATTCTTCTTCTTTATCTCTACTTAACCTTGCTGTGAACAACTTACATGGAAGCATACCTAATGAGGTAGGCAAATTATCAAGCTTGACACTTCTTGCACTAAATGGAAACTACTTGTCTGGAACAATTCCTCCTTCAATTTTTAACATTTCTGCATTGAACTTTTTCACTGTCTCTCAAAATCATTTGCATGGTAACTTACCAGCTGATGTTGGTTTTACTCTTCCTAATCTTGGAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTCCTGAATCTCTGTCAAATGCTTCAAGACTAGAAATTCTTGACTTTGCTGAAAATGGTCTCACTGGAACACTTCCTAAGAACATAGGGAGATTGCCCCATTTGAAAAGACTCAATTTTGATGAGAATAGACTTGGAACTGGGAAAGCTGGTGACCTGAATTTTCTTGCTTCCTTGGTTAATTGTACTGCTCTTGAAGTTTTAGGTCTTGCTAGAAATGTTTTTGGAGGAGAATTGCCTAGCTCAATTGCTAATCTTTCAACCCAATTGAATACACTCACATTAGGTCTGAATGCCATACATGGATGTATTCCTCTAGGGATTGGGAACCTTGCTAACTTAACTGTTCTGGGGTTGGAAGAGAACAGCCTAAGTGGTTCTGTTCCTGATACAATAGGTATGCTTCAAAAGTTAAATGATCTAGAATTGAATGGAAACAACTTTTCTGGGGTGATCCCTTCCTCCATGGGAAACTTGACAAGATTAACAATGCTACTCATGGGGGAGAACAACTTTGAAGGACATATACCAGAAAGTCTTGGAAAATGCCAGAGCTTGTTGATGCTAAATTTTAGCCATAATATGCTAAATGGTACCATACCAAGACAAGTACTTACCTTGTCTTCTCTTTCAATTTACCTGGACTTGTCTCATAATGCTTTGACAGGGTCTGTGCCAATTGAAGTGGGTAAGTTAGTCAATCTAGAACATTTGGACCTCTCAGAAAACAAATTGTCTGGCATGATTCCATCCTCTCTTGGCAGCTGTATTAGTTTGGAATGGTTGCATTTGCAAGGTAACTTCTTTGAGGGAAACATTCCTTCAACTATAGAGAATTTGAGAGGTTTACAAGATATAGACCTGTCACACAATAACTTGTCCGGGAAGATTCCTGAATTTCTTGGTGAGTTCAAAGTGCTCATGCATCTCAATCTTTCTTACAATGATTTTGAGGGCAATATTCCAACAAATGGAATACTCAAGAATGCAACTTCCTTTTCAATGTATGGAAACAACAAGCTTTGTGGTGGTGTCCCAGAGCTAAATTTACCTGCATGCATTATCAAAAAAGCCTCTTCCTTTGGAAAATTTCATGGCCCCAAGGTGGTTATCCTTGTAGTTAGTACACTTGTATTTGTACTCTTTCTATCTTGTTTCCTTACAATCTTCATGGTAAAAAGATCAAGAAAGAAAAGTTTAAGAGCAACTACTACAAATGATTTGGAATTGGGTATTTCTTACTCAGAAATTGCTAGGTGCACTGGAGGGTTCTCTCAGGATAACTTGATTGGGTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAATTATTGCAATTAAAGTATTGAATCTTGAACAAAGAGGAGCTTCAAAAAGCTTCATTGATGAATGCCAAGTTCTGAGAAATATAAGGCACCGCAACCTTCTTAAGGTCATAACCGCCATCTCAAGCATTGATCATCAAGGTAATGACTTCAAAGCTCTGGTGTTTGAGTTCATGTCTAATGGAAGTCTTGAAGATTGGTTACATCCTATAAATAATCTGCAAAATCAGACAAAGACATTGACATTTTCCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTATGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCCCATGTTGGTGACTTTGGATTGGCAACATTTTTGTTTGAAGAATCATGCAATTCTCCCAAACATTCAATTATGTCAGCTAACCTAAAGGGCTCTATTGGGTACATCCCTCCAGAGTATGGAATGGGTGGTCACAGTTCTGCATTGGGAGATGTTTACAGTTTTGGGATACTATTACTAGAAATTTTCACAGGGAAAAGACCAACAGATGAGATGTTTGAAGGTGGCATGGGAATTAACCAGTTTGCAGCTATGGCTTTACCAAATCATGCCATAGATATAATTGATCCGTTATTGCTCTCTGAGGAAGAATTTGATGATAGAAATGAAGAAAATTCCACAGAGGAGACAGCAATAAGGAGGGAGGAGGACCCTGAAGGCCTTGCTATAATGGAGAATTGCTTAGTTTCAGTGTTGCAAATTGGAGTGACATGCTCTGCAGCTTCGCCAAGTGAAAGAATTCCAATGACTGTGGTTGTCAACCAATTGCATGCAATCAAGAACTCGTATTTAAGACACAACCAGTGGAATAGTTGA 3054 0.3841 MNNSCVNSNKIVFQFLCGFLLLCMSTCKDSATASTLQENETDLHALLDFKSRIVQDPFQIMSLWNDSIHHCNWEGVTCNISNGRVIYLILEDLTLAGTVPPSIGNLTFLTRLNLRNSSFHGEFPQEVGYLLYLQHLNISYNSFGGSIPSNLSHCTKLSVLSAGHNKFTGTIPAWIGNSSSLSLLNLAVNNLHGSIPNEVGKLSSLTLLALNGNYLSGTIPPSIFNISALNFFTVSQNHLHGNLPADVGFTLPNLGTFAGGVNNFTGTIPESLSNASRLEILDFAENGLTGTLPKNIGRLPHLKRLNFDENRLGTGKAGDLNFLASLVNCTALEVLGLARNVFGGELPSSIANLSTQLNTLTLGLNAIHGCIPLGIGNLANLTVLGLEENSLSGSVPDTIGMLQKLNDLELNGNNFSGVIPSSMGNLTRLTMLLMGENNFEGHIPESLGKCQSLLMLNFSHNMLNGTIPRQVLTLSSLSIYLDLSHNALTGSVPIEVGKLVNLEHLDLSENKLSGMIPSSLGSCISLEWLHLQGNFFEGNIPSTIENLRGLQDIDLSHNNLSGKIPEFLGEFKVLMHLNLSYNDFEGNIPTNGILKNATSFSMYGNNKLCGGVPELNLPACIIKKASSFGKFHGPKVVILVVSTLVFVLFLSCFLTIFMVKRSRKKSLRATTTNDLELGISYSEIARCTGGFSQDNLIGSGSFGSVYKGTLSSDGSIIAIKVLNLEQRGASKSFIDECQVLRNIRHRNLLKVITAISSIDHQGNDFKALVFEFMSNGSLEDWLHPINNLQNQTKTLTFSQRLNIAIDVACALEYLHHFYETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESCNSPKHSIMSANLKGSIGYIPPEYGMGGHSSALGDVYSFGILLLEIFTGKRPTDEMFEGGMGINQFAAMALPNHAIDIIDPLLLSEEEFDDRNEENSTEETAIRREEDPEGLAIMENCLVSVLQIGVTCSAASPSERIPMTVVVNQLHAIKNSYLRHNQWNS. 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01616 1017 PRINTS Leucine-rich repeat signature 502 515 - -
Seca2g01616 1017 PRINTS Leucine-rich repeat signature 547 560 - -
Seca2g01616 1017 Pfam Protein kinase domain 692 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01616 1017 Gene3D Phosphorylase Kinase; domain 1 673 772 - -
Seca2g01616 1017 PANTHER OS04G0122200 PROTEIN 200 1010 - -
Seca2g01616 1017 ProSiteProfiles Protein kinase domain profile. 691 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01616 1017 SMART serkin_6 691 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g01616 1017 SUPERFAMILY Protein kinase-like (PK-like) 669 1002 IPR011009 -
Seca2g01616 1017 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Seca2g01616 1017 SMART LRR_typ_2 402 425 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 426 450 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 499 523 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 547 571 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 130 154 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 378 401 IPR003591 -
Seca2g01616 1017 SMART LRR_typ_2 202 226 IPR003591 -
Seca2g01616 1017 FunFam Leucine-rich repeat receptor-like protein kinase 39 197 - -
Seca2g01616 1017 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Seca2g01616 1017 SUPERFAMILY L domain-like 39 347 - -
Seca2g01616 1017 Gene3D Transferase(Phosphotransferase) domain 1 773 1016 - -
Seca2g01616 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 318 626 - -
Seca2g01616 1017 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 220 316 - -
Seca2g01616 1017 Gene3D Ribonuclease Inhibitor 194 249 IPR032675 -
Seca2g01616 1017 Gene3D Ribonuclease Inhibitor 250 316 IPR032675 -
Seca2g01616 1017 Gene3D Ribonuclease Inhibitor 39 193 IPR032675 -
Seca2g01616 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Seca2g01616 1017 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Seca2g01616 1017 Pfam Leucine Rich Repeat 501 523 IPR001611 GO:0005515
Seca2g01616 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 773 1014 - -
Seca2g01616 1017 Gene3D Ribonuclease Inhibitor 318 620 IPR032675 -
Seca2g01616 1017 SUPERFAMILY L domain-like 355 610 - -
Seca2g01616 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 772 - -
Seca2g01616 1017 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01616 Seca-Chr2 28704236 28707495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01616 39 1014 Receptor kinase-like Gene Family AT3G47570 44.554 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca2g01616 Pkinase 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01616 - - gmx:100785230 1638.62