Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01584 ATGGGGTTTGGTCTCAAAAGAAGGAAGAAAAAAGAAGAAGGAGGAGAAAAGATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCAGGATGGTGCCTGCCTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTGGGATTTCTTAGAATTCTTATATACAAGTGTTTGTCACAGGCATATCAGGATGGGAAGACAACTATGTCTATTTATGAAAGAAAAGCCAGTCTGAAGGAATTCTATGGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGGAAACAGAAACATCTATGTGCTACCAGGTACAAGCCTAAAGATTCAACAAGCAAAGGAAAGCTCTCTGAAATTGACATGGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGATCTCGATCTTGCCCTTTCTGCAGGGACAATCTTAAAAGAGTGAACTCTGGTGACCTTTGGATCTACATGAACAGCAGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGTCTGTTTTTGTACATAGAAAAGTTGCCTCTTGTTGCCAGACCCTATATTCATGTCATATCGTCACAACTGGCCATTGCCACTTAG 798 0.4198 MGFGLKRRKKKEEGGEKMRKSFKDSLKALEADIQFANTLASDYPSDQDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGFLRILIYKCLSQAYQDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATRYKPKDSTSKGKLSEIDMEREEECGICMEMNSKVVLPNCNHSMCMKCYRDWHARSRSCPFCRDNLKRVNSGDLWIYMNSSEIDDLASINKENLKSLFLYIEKLPLVARPYIHVISSQLAIAT. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01584 265 Pfam Zinc finger, C3HC4 type (RING finger) 164 210 - -
Seca2g01584 265 PANTHER RING FINGER PROTEIN 41, 151 20 249 - -
Seca2g01584 265 SUPERFAMILY RING/U-box 155 210 - -
Seca2g01584 265 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Seca2g01584 265 FunFam RING/U-box superfamily protein 148 214 - -
Seca2g01584 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 214 IPR013083 -
Seca2g01584 265 SMART ring_2 167 204 IPR001841 -
Seca2g01584 265 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01584 Seca-Chr2 27909211 27912580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01584 111 209 C3H Transcription Factor Family AT5G01960 28.846 1.42e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01584 K25840 - gmx:100814293 434.491