Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01549 ATGGGTTCTCACCAACAAGAACCATGGATGTTGGAAAATGGCACCTTGAAGGGTTTGAGCAAGGAGATGAGGCATGGACGACGTACAGCACATAACATGTCCTCTTCTTCCTTGCGCAAGAAATCTGATATCACTCTTGTGTCAAAGGTTCGATGTGCTTTGCTTAGAAACTTTCTTGTTAACATCCAAGAGGTTATTCTTGGAACCAAGCTTTCCATTCTCTTCCCTGCTATCCCTGCTGCTATCATTGCTGAATGCTATGGTTTTGGAAGGTCCTGGGTTTTTGTATTGAGCTTACTTGGACTTACCCCACTTGCTGAACGTGTTAGCTTCCTCACAGAACAAGTTGCCTATTACACAGGTCCCACAGTTGGAGGACTTCTAAATGCCACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCTCTCAGCACAAACAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTTTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACCTTAGACTGGAACAAAAATATGACAGAAGACAAGCAGATGTTAACTCACTCATGTTGCTGCTTGCATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATTTAGTGCTCCTTCTGCTGCTCTCACTGCAGAGTCATCACTCAACTTGTCTAGAGCTTCTAGCATTGTGATGATGCTTGCATATCTTGCTTACCTTGTCTTTCAACTGTGGACACACCGGCAATTATTTGAAGCTGAAGATGAAGATGAAGATTGCAACAATGCTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGTTGGTTGGAATGACTGTGTTCATTGCTTTGTTATCTGAATATGTGGTGGATACAATTGAGGATGCATCTGATTCATGGGGTCTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTAGGTGTTGCATTGGGTTCAGCAACACAAATTGGCATGTTTGTGGTTCCCCTATGTGTGATTGTGTCTTGGATAATGGGTATCAAAATGGACCTGAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACAAGCTTTACTTTACAGGTATATTAA 1206 0.4254 MGSHQQEPWMLENGTLKGLSKEMRHGRRTAHNMSSSSLRKKSDITLVSKVRCALLRNFLVNIQEVILGTKLSILFPAIPAAIIAECYGFGRSWVFVLSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALSTNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRLEQKYDRRQADVNSLMLLLALLCHLLPMLFRFSAPSAALTAESSLNLSRASSIVMMLAYLAYLVFQLWTHRQLFEAEDEDEDCNNASEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVSWIMGIKMDLNFNLLETGSLALAIIATSFTLQVY. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01549 401 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016020|GO:0055085
Seca2g01549 401 Pfam Sodium/calcium exchanger protein 280 394 IPR004837 GO:0016020|GO:0055085
Seca2g01549 401 Gene3D - 122 261 IPR044880 -
Seca2g01549 401 Gene3D - 266 401 IPR044880 -
Seca2g01549 401 FunFam Vacuolar cation/proton exchanger 122 266 - -
Seca2g01549 401 NCBIfam calcium/proton exchanger 77 393 IPR004798 GO:0006816|GO:0015369
Seca2g01549 401 NCBIfam calcium/proton exchanger 57 399 - -
Seca2g01549 401 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 399 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01549 Seca-Chr2 27705165 27709329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01549 7 400 Antiporters AT3G51860 74.631 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01549 K07300 - gmx:100816231 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10773 4 244899739 244902665 Seca2g01549 2 27705165 27709329 PCT