Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01530 ATGGCGGAGTCGCATTCCTCCGCTCCGACCACTCCTCCTCCTTCCTCCGCTAACCGTGAAGCTTCTCCGTCGGAGGAAAATGCATCGAACGGCTCTCAAACTCGGTTGCGGTCACCGGAGTCTCGCCGTGTGAGCATCACCTTTGGAAGAACCAGCTGGAGTTACGGGGATGAATCAGCCATTGTTAGGGACGATACCTGGTCCTGCATCGCCGTCGTATTCAGCTTTTGGTTCTTCGTGTCGGTGACTTTGATACTGGGGGTTTATGGCTCGATGGTCATCATGCTTGGTCCAGAATCTTCAATTGTTTTACAACCTAGCCCTGTTTTCGTGCAATATGTGAAGGTAGAAAACTTAGACGAAAAGCCAGGACCCATTCTTTATGGCACATATCAATATCCACCTCTTGATGTTGTTACCACTTGGGGAGAAACTCGCAATGTATCTCTTCCCTCTGGCTTACATAAGGCAAGTATATATGAATGGAAATATTATCTGAATAGAGGATCTGAAGTAAATATCTCGTATAGCTTGAGCTCTGAGAGCTCTTCCATTTTCCTGGTAATTGCAGAAGGGGCTGAAAGCCTCTCTCTGTGGCTGGAGGACCCAACATATCCTAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCTTCTCGTCCAGCTATTATGTAGCAGTGGGTAATTTGGATGAGGAAGTGGAGGTGGACTTAAACATCAGTGTAAGGGCCTTCTTGCACAATACAACGAATGCTTACTACAAATGTTCTCTGACTAGTAGTCCATGCAGTTTGAGTATTTTCTTTCCTGATGGAAATGCAGCTGTCTTAGTTTCTCCTGGTCCACAACAGGCAAGATTGTTATTATATACTTGTTTCAAAGAAATAAACACATCCAATGATGAATGGTATGTCAAAGTGTCCTATGGACCAAGATGGGTGACATATATTTTTGGCATAGGTGGAATGACTTTGCTTATGTTTTGGGCCTTCAAATTCTTGAACAAACTCCAGCGTGGCCGTGAAGATAGAGCGGAAGTTGGACATGATGGAACAGCATCTCAGAGAGCCCCTTTACTTTCTCGCAAAGAAGATGATCTATCAAGTTGGGGTTCATCATATGATTCCTTACCAGAGGATGAAGAGGATCTTGACCTTCTAGCAGGAGGTTCCATTGATGGGAAGTTATCAGGTGATGGAGAAACCAGTAATAATACCCAGCGTCTCTGTGCAATTTGCTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGCGGGCACTGTGCAGCTTGTTTTGCATGTGGAACCACGATAGCAGAGGCAGCTGGTACATGCCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAGATTTTTACTGTCTGA 1410 0.4504 MAESHSSAPTTPPPSSANREASPSEENASNGSQTRLRSPESRRVSITFGRTSWSYGDESAIVRDDTWSCIAVVFSFWFFVSVTLILGVYGSMVIMLGPESSIVLQPSPVFVQYVKVENLDEKPGPILYGTYQYPPLDVVTTWGETRNVSLPSGLHKASIYEWKYYLNRGSEVNISYSLSSESSSIFLVIAEGAESLSLWLEDPTYPNTTLSWNMIHGTGMITQEIFFSSSYYVAVGNLDEEVEVDLNISVRAFLHNTTNAYYKCSLTSSPCSLSIFFPDGNAAVLVSPGPQQARLLLYTCFKEINTSNDEWYVKVSYGPRWVTYIFGIGGMTLLMFWAFKFLNKLQRGREDRAEVGHDGTASQRAPLLSRKEDDLSSWGSSYDSLPEDEEDLDLLAGGSIDGKLSGDGETSNNTQRLCAICFDAPRDCFFLPCGHCAACFACGTTIAEAAGTCPVCRRNMKKVRKIFTV. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01530 469 SUPERFAMILY RING/U-box 417 463 - -
Seca2g01530 469 PANTHER OS05G0521000 PROTEIN 56 469 - -
Seca2g01530 469 MobiDBLite consensus disorder prediction 1 42 - -
Seca2g01530 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 469 IPR013083 -
Seca2g01530 469 ProSiteProfiles Zinc finger RING-type profile. 418 457 IPR001841 -
Seca2g01530 469 MobiDBLite consensus disorder prediction 353 386 - -
Seca2g01530 469 Pfam Domain of unknown function (DUF4793) 220 337 IPR032010 -
Seca2g01530 469 SMART ring_2 418 456 IPR001841 -
Seca2g01530 469 Pfam Domain of unknown function (DUF4792) 124 196 IPR032008 -
Seca2g01530 469 Pfam Zinc finger, C3HC4 type (RING finger) 415 463 - -
Seca2g01530 469 FunFam E3 ubiquitin-protein ligase APD2 407 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01530 Seca-Chr2 27155242 27161396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01530 391 466 C3H Transcription Factor Family AT3G06140 30.263 7.16e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01530 - - gmx:100791057 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01530 2 27155242 27161396 Seca2g01530 2 27155242 27161396 ECH