Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01527 ATGGAAATGGCTTCTAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTAGAAGAACCGCCGTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGTCTCTATGGACATCCAAATGAAAACTGGGAAGTGACTCTGCCAGCAGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTGACTGACAGGAAGCCAATCAAGGACAAGCCCACTGCAGATAGTGGAAGCAAATCCAGGGGAAGCACCAAGAGATCTAGTGATGGACAAGTGAAAAGCAACCCAAAGTTTGCAGATGAGGGATATGAGGAGGAAGAAGATGAGCATAGTGAAACACTCTGCGGGAACTGTGGTGGAAATTACAACGCCGACGAGTTTTGGATTGGCTGCGATATATGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAGGAGGGGCAGGCCTTAA 720 0.4764 MEMASSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNENWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEEDEHSETLCGNCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01527 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Seca2g01527 239 CDD PHD_AL_plant 185 235 IPR044104 -
Seca2g01527 239 FunFam PHD finger alfin-like protein 178 234 - -
Seca2g01527 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Seca2g01527 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Seca2g01527 239 SMART PHD_3 185 233 IPR001965 -
Seca2g01527 239 Pfam PHD-finger 186 233 IPR019787 -
Seca2g01527 239 MobiDBLite consensus disorder prediction 139 174 - -
Seca2g01527 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 233 IPR013083 -
Seca2g01527 239 MobiDBLite consensus disorder prediction 148 165 - -
Seca2g01527 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Seca2g01527 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01527 Seca-Chr2 27063349 27068632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01527 4 238 Alfin-like Transcription Factor Family AT5G05610 76.695 1.03e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca2g01527 Alfin 5.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01527 K26274 - gmx:100793126 464.922