Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01520 ATGGAAAAGGACTTGAAGGATAAGGTCAAAGAAGGGGAAACAAAGCAAGTCAAATACAGAGGAGTACGGTGCAGGCCTTGGGGAAAATTTTCTGCAGAGATTCGGGATTCAGCTAGGCATGGAGCTCGAGTGTGGCTTGGGACTTTTAACACTGCAGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCTTTTCAAATGAGAGGATCAAACATTCTCTCAAATAAATTATTTCTCACCAATTATTTCTTTACTACCTAA 258 0.4225 MEKDLKDKVKEGETKQVKYRGVRCRPWGKFSAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFQMRGSNILSNKLFLTNYFFTT. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01520 85 SUPERFAMILY DNA-binding domain 18 74 IPR016177 GO:0003677
Seca2g01520 85 ProSiteProfiles AP2/ERF domain profile. 18 82 IPR001471 GO:0003700|GO:0006355
Seca2g01520 85 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Seca2g01520 85 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca2g01520 85 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca2g01520 85 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca2g01520 85 Gene3D AP2/ERF domain 17 81 IPR036955 GO:0003700|GO:0006355
Seca2g01520 85 PANTHER DNA-BINDING DOMAIN 12 74 IPR044808 GO:0003700|GO:0009873
Seca2g01520 85 CDD AP2 18 74 IPR001471 GO:0003700|GO:0006355
Seca2g01520 85 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01520 Seca-Chr2 26821767 26822024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01520 13 82 AP2-EREBP Transcription Factor Family AT3G23230 64.286 1.45e-27 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g01520 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01520 - - gmx:100800069 117.472