Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01518 ATGACATCCTTGCCAGTTGATGTAGAAGTCGCTCATATGCCACAATCATCTTCTTACTCTTCTTTGACACCAGATTTTGGTTTGGGCAATAATCAAAATGATGAACTTGGGCTTCATGCCACGGAGGACGTTCCTATGCCACAATCATCTGAGATAAATGAATGGGTTCCAAATTGTGATGAAGAAGTAAATCCTAAGTTAGGGCAGATATTTGATACATTAGAAGATGGTGAAAAGTTTTACAAAAGATATGCACACAGTGTTGGATTTAGCGTGCGTTGCTCATCAGAAAGTAAAGACAAAGATAGAGTAAAGCGGTGGAAGTATTTTGTTTGCTCAAAAGAAGGTTACAAACCAAATAAGGCAGAAAATGTGGAACAAAGCAAATCAACAGCTAAGGCTAGAAGAAGGAGTCTTACAAGAGAAGGATGTAATGCAAAAGGTTGCTTTCAAATTGTTAGAGGGAGGTAA 471 0.3822 MTSLPVDVEVAHMPQSSSYSSLTPDFGLGNNQNDELGLHATEDVPMPQSSEINEWVPNCDEEVNPKLGQIFDTLEDGEKFYKRYAHSVGFSVRCSSESKDKDRVKRWKYFVCSKEGYKPNKAENVEQSKSTAKARRRSLTREGCNAKGCFQIVRGR. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01518 156 Pfam FAR1 DNA-binding domain 79 147 IPR004330 -
Seca2g01518 156 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 49 147 - -
Seca2g01518 156 Coils Coil 122 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01518 Seca-Chr2 26768286 26768989 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g01518 FAR1 2.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01518 - - lja:Lj0g3v0232569.1 160.999