Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01517 ATGGAGGGTCATCATCTCCATCTCCATCATCAACAACATCAACATCAACGACAACAACATCGTCAACAACAACACCATCCTCCTCCTCATAACATCATCACTAACGTGGATGCTTCAGATAGATTTCCTCAATGGAGCATCCAAGAAACAAAAGAGTTTCTCATGATCCGAGCAGAGTTAGATCAAACTTTCATGGAAACCAAAAGGAACAAACAGCTTTGGGAAGTTATCTCCAATAAGATGAAGGAAAAGGGTTATCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGCTATAAGGGATGTGAAACGATGGAGCCAGAAGGGGTGAGGCAGCAATTTCCATTTTACAATGAACTTCAATCGATTTTCACTTCAAGGATGCAGAGAATGTTGTGGGCTGAAGCAGAAGGAGGGTCTAAAAAGAAAGCGGTGCACCTTTCTTCTGAGGATGAAGATGATGGGAATGAAGAGAGTGAAGGAGATCACAACAAGGGTGGTAGTAGTAGTAGTAGGAAGAAGAAGAAGAAGGGTAAGATGGTTAGTGGAGGTAGTAGTAGTGGGGGTGGTAATAGCAATTTGAAGGAGATTCTAGAAGAGTTTATGAGACAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATATGAGGCAAGGGAGAGTGAGAGGAGGTTGAAGGAGATGGAATGGAGGCAAACTATGGAAGCATTAGAGAATGAGAGGATAATGATGGATCAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGAAGAAGCTAGGGCTGATAAGAGAGATGCTCTAATCACAGCTTTGCTTAACAAGCTAAGAAGAGAAGAGATGTAG 864 0.4225 MEGHHLHLHHQQHQHQRQQHRQQQHHPPPHNIITNVDASDRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNKMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEGVRQQFPFYNELQSIFTSRMQRMLWAEAEGGSKKKAVHLSSEDEDDGNEESEGDHNKGGSSSSRKKKKKGKMVSGGSSSGGGNSNLKEILEEFMRQQMQMEAQWMEAYEARESERRLKEMEWRQTMEALENERIMMDQRWREREEQRRIREEARADKRDALITALLNKLRREEM. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01517 287 Gene3D - 45 106 - -
Seca2g01517 287 Coils Coil 196 216 - -
Seca2g01517 287 ProSiteProfiles Myb-like domain profile. 45 101 IPR001005 -
Seca2g01517 287 MobiDBLite consensus disorder prediction 144 198 - -
Seca2g01517 287 FunFam Zinc finger and SCAN domain-containing 20 45 106 - -
Seca2g01517 287 CDD GT1 43 108 - -
Seca2g01517 287 PANTHER FI21293P1 13 283 - -
Seca2g01517 287 Pfam Myb/SANT-like DNA-binding domain 44 128 IPR044822 -
Seca2g01517 287 MobiDBLite consensus disorder prediction 8 24 - -
Seca2g01517 287 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01517 Seca-Chr2 26750181 26751763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01517 40 285 Trihelix Transcription Factor Family AT5G01380 55.805 2.15e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca2g01517 Myb_DNA-bind_4 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01517 - - gmx:100778195 377.096