Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01483 ATGGAGTGCATTAACCTTACCTCTTCTTCTGCAGCCTCATCTTCCTCATCTTCCAAGGCAAACAACAAGAGCAAGGAGAAAAAGGGTGGTGTGAAGAAAACCAAGGGAGTAGTGAAGCTTTCAACTGACCCTCAAAGTGTTGCAGCAAGAGAAAGAAGGCATAGAATCAGTGATAGGTTCAAGATCCTTCAGAGTATGGTCCCTGGTGGGAGTAAGATGGACACTGTTTCTATGTTGGAAGAAGCCATTCACTATGTCAACTTCCTCAAGACTCAGATTTGGCTTCACCAAACAATGATAAACTCTGTGGATGATGATCAGTCACCAATGTTCCTTCCTTCAGAGTGTTTTCCTAATGAACAAACTATTTCCCTTCAGCAAAACCCTTCATCAGTAGATTCTCTGCAGAGTTTACCACAGCTACCAGTACTAGATCAGTTCTGCTTCCAAGGTGAAGAAGATGCCAATAACTTTGATGCCACTATGAAATATTGGCCAGCTTAG 504 0.4266 MECINLTSSSAASSSSSSKANNKSKEKKGGVKKTKGVVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVNFLKTQIWLHQTMINSVDDDQSPMFLPSECFPNEQTISLQQNPSSVDSLQSLPQLPVLDQFCFQGEEDANNFDATMKYWPA. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01483 167 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 137 IPR045843 GO:0003700|GO:0006355
Seca2g01483 167 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g01483 167 CDD bHLH_AtIND_like 41 100 - -
Seca2g01483 167 MobiDBLite consensus disorder prediction 1 48 - -
Seca2g01483 167 FunFam Transcription factor LAX PANICLE 43 106 - -
Seca2g01483 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 100 IPR036638 GO:0046983
Seca2g01483 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Seca2g01483 167 SMART finulus 46 95 IPR011598 GO:0046983
Seca2g01483 167 Gene3D - 43 107 IPR036638 GO:0046983
Seca2g01483 167 Pfam Helix-loop-helix DNA-binding domain 50 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01483 Seca-Chr2 26094249 26094752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01483 38 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 62.500 6.90e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g01483 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01483 - - gmx:113000114 174.481